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Generation and repair of AID-initiated DNA lesions in B lymphocytes |
Zhangguo Chen,Jing H. Wang() |
Integrated Department of Immunology, University of Colorado Anschutz Medical Campus and National Jewish Health, Denver, CO 80206, USA |
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Abstract Activation-induced deaminase (AID) initiates the secondary antibody diversification process in B lymphocytes. In mammalian B cells, this process includes somatic hypermutation (SHM) and class switch recombination (CSR), both of which require AID. AID induces U:G mismatch lesions in DNA that are subsequently converted into point mutations or DNA double stranded breaks during SHM/CSR. In a physiological context, AID targets immunoglobulin (Ig) loci to mediate SHM/CSR. However, recent studies reveal genome-wide access of AID to numerous non-Ig loci. Thus, AID poses a threat to the genome of B cells if AID-initiated DNA lesions cannot be properly repaired. In this review, we focus on the molecular mechanisms that regulate the specificity of AID targeting and the repair pathways responsible for processing AID-initiated DNA lesions.
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Keywords
class switch recombination
somatic hypermutation
activation-induced deaminase
DNA repair
genomic instability
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Corresponding Author(s):
Jing H. Wang
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Just Accepted Date: 01 May 2014
Issue Date: 21 May 2014
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|
1 |
GaneshK, NeubergerMS. The relationship between hypothesis and experiment in unveiling the mechanisms of antibody gene diversification. FASEB J2011; 25(4): 1123–1132 doi: 10.1096/fj.11-0402ufm pmid: 21454370
|
2 |
KatoL, StanlieA, BegumNA, KobayashiM, AidaM, HonjoT. An evolutionary view of the mechanism for immune and genome diversity. J Immunol2012; 188(8): 3559–3566 doi: 10.4049/jimmunol.1102397 pmid: 22492685
|
3 |
WangJH. The role of activation-induced deaminase in antibody diversification and genomic instability. Immunol Res2013; 55(1-3): 287–297 doi: 10.1007/s12026-012-8369-4 pmid: 22956489
|
4 |
MuramatsuM, KinoshitaK, FagarasanS, YamadaS, ShinkaiY, HonjoT. Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell2000; 102(5): 553–563 doi: 10.1016/S0092-8674(00)00078-7 pmid: 11007474
|
5 |
Di NoiaJM, NeubergerMS. Molecular mechanisms of antibody somatic hypermutation. Annu Rev Biochem2007; 76(1): 1–22 doi: 10.1146/annurev.biochem.76.061705.090740 pmid: 17328676
|
6 |
ChahwanR, EdelmannW, ScharffMD, RoaS. AIDing antibody diversity by error-prone mismatch repair. Semin Immunol2012; 24(4): 293–300 doi: 10.1016/j.smim.2012.05.005 pmid: 22703640
|
7 |
ChaudhuriJ, BasuU, ZarrinA, YanC, FrancoS, PerlotT, VuongB, WangJ, PhanRT, DattaA, ManisJ, AltFW. Evolution of the immunoglobulin heavy chain class switch recombination mechanism. Adv Immunol2007; 94: 157–214 doi: 10.1016/S0065-2776(06)94006-1 pmid: 17560275
|
8 |
StavnezerJ. Complex regulation and function of activation-induced cytidine deaminase. Trends Immunol2011; 32(5): 194–201 doi: 10.1016/j.it.2011.03.003 pmid: 21493144
|
9 |
AltFW, ZhangY, MengFL, GuoC, SchwerB. Mechanisms of programmed DNA lesions and genomic instability in the immune system. Cell2013; 152(3): 417–429 doi: 10.1016/j.cell.2013.01.007 pmid: 23374339
|
10 |
DanielJA, NussenzweigA. The AID-induced DNA damage response in chromatin. Mol Cell2013; 50(3): 309–321 doi: 10.1016/j.molcel.2013.04.017 pmid: 23664375
|
11 |
NussenzweigA, NussenzweigMC. Origin of chromosomal translocations in lymphoid cancer. Cell2010; 141(1): 27–38 doi: 10.1016/j.cell.2010.03.016 pmid: 20371343
|
12 |
JungD, AltFW. Unraveling V(D)J recombination; insights into gene regulation. Cell2004; 116(2): 299–311 doi: 10.1016/S0092-8674(04)00039-X pmid: 14744439
|
13 |
HackneyJA, MisaghiS, SengerK, GarrisC, SunY, LorenzoMN, ZarrinAA. DNA targets of AID evolutionary link between antibody somatic hypermutation and class switch recombination. Adv Immunol2009; 101: 163–189 doi: 10.1016/S0065-2776(08)01005-5 pmid: 19231595
|
14 |
ChaudhuriJ, AltFW. Class-switch recombination: interplay of transcription, DNA deamination and DNA repair. Nat Rev Immunol2004; 4(7): 541–552 doi: 10.1038/nri1395 pmid: 15229473
|
15 |
BoboilaC, AltFW, SchwerB. Classical and alternative end-joining pathways for repair of lymphocyte-specific and general DNA double-strand breaks. Adv Immunol2012; 116: 1–49 doi: 10.1016/B978-0-12-394300-2.00001-6 pmid: 23063072
|
16 |
FuYX, ChaplinDD. Development and maturation of secondary lymphoid tissues. Annu Rev Immunol1999; 17(1): 399–433 doi: 10.1146/annurev.immunol.17.1.399 pmid: 10358764
|
17 |
HonjoT, KinoshitaK, MuramatsuM. Molecular mechanism of class switch recombination: linkage with somatic hypermutation. Annu Rev Immunol2002; 20(1): 165–196 doi: 10.1146/annurev.immunol.20.090501.112049 pmid: 11861601
|
18 |
MacLennanIC. Germinal centers. Annu Rev Immunol1994; 12(1): 117–139 doi: 10.1146/annurev.iy.12.040194.001001 pmid: 8011279
|
19 |
MacLennanIC, ToellnerKM, CunninghamAF, SerreK, SzeDM, ZúñigaE, CookMC, VinuesaCG. Extrafollicular antibody responses. Immunol Rev2003; 194(1): 8–18 doi: 10.1034/j.1600-065X.2003.00058.x pmid: 12846803
|
20 |
StavnezerJ, GuikemaJE, SchraderCE. Mechanism and regulation of class switch recombination. Annu Rev Immunol2008; 26(1): 261–292 doi: 10.1146/annurev.immunol.26.021607.090248 pmid: 18370922
|
21 |
NagaokaH, MuramatsuM, YamamuraN, KinoshitaK, HonjoT. Activation-induced deaminase (AID)-directed hypermutation in the immunoglobulin Smu region: implication of AID involvement in a common step of class switch recombination and somatic hypermutation. J Exp Med2002; 195(4): 529–534 doi: 10.1084/jem.20012144 pmid: 11854365
|
22 |
Reina-San-MartinB, DifilippantonioS, HanitschL, MasilamaniRF, NussenzweigA, NussenzweigMC. H2AX is required for recombination between immunoglobulin switch regions but not for intra-switch region recombination or somatic hypermutation. J Exp Med2003; 197(12): 1767–1778 doi: 10.1084/jem.20030569 pmid: 12810694
|
23 |
ShafferAL, RosenwaldA, HurtEM, GiltnaneJM, LamLT, PickeralOK, StaudtLM. Signatures of the immune response. Immunity2001; 15(3): 375–385 doi: 10.1016/S1074-7613(01)00194-7 pmid: 11567628
|
24 |
LiangG, KitamuraK, WangZ, LiuG, ChowdhuryS, FuW, KouraM, WakaeK, HonjoT, MuramatsuM. RNA editing of hepatitis B virus transcripts by activation-induced cytidine deaminase. Proc Natl Acad Sci USA2013; 110(6): 2246–2251 doi: 10.1073/pnas.1221921110 pmid: 23341589
|
25 |
NeubergerMS, HarrisRS, Di NoiaJ, Petersen-MahrtSK. Immunity through DNA deamination. Trends Biochem Sci2003; 28(6): 305–312 doi: 10.1016/S0968-0004(03)00111-7 pmid: 12826402
|
26 |
BransteitterR, PhamP, ScharffMD, GoodmanMF. Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase. Proc Natl Acad Sci USA2003; 100(7): 4102–4107 doi: 10.1073/pnas.0730835100 pmid: 12651944
|
27 |
ChaudhuriJ, KhuongC, AltFW. Replication protein A interacts with AID to promote deamination of somatic hypermutation targets. Nature2004; 430(7003): 992–998 doi: 10.1038/nature02821 pmid: 15273694
|
28 |
ChaudhuriJ, TianM, KhuongC, ChuaK, PinaudE, AltFW. Transcription-targeted DNA deamination by the AID antibody diversification enzyme. Nature2003; 422(6933): 726–730 doi: 10.1038/nature01574 pmid: 12692563
|
29 |
DickersonSK, MarketE, BesmerE, PapavasiliouFN. AID mediates hypermutation by deaminating single stranded DNA. J Exp Med2003; 197(10): 1291–1296 doi: 10.1084/jem.20030481 pmid: 12756266
|
30 |
PhamP, BransteitterR, PetruskaJ, GoodmanMF. Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation. Nature2003; 424(6944): 103–107 doi: 10.1038/nature01760 pmid: 12819663
|
31 |
RamiroAR, StavropoulosP, JankovicM, NussenzweigMC. Transcription enhances AID-mediated cytidine deamination by exposing single-stranded DNA on the nontemplate strand. Nat Immunol2003; 4(5): 452–456 doi: 10.1038/ni920 pmid: 12692548
|
32 |
SohailA, KlapaczJ, SamaranayakeM, UllahA, BhagwatAS. Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations. Nucleic Acids Res2003; 31(12): 2990–2994 doi: 10.1093/nar/gkg464 pmid: 12799424
|
33 |
TianM, AltFW. Transcription-induced cleavage of immunoglobulin switch regions by nucleotide excision repair nucleases in vitro. J Biol Chem2000; 275(31): 24163–24172 doi: 10.1074/jbc.M003343200 pmid: 10811812
|
34 |
YuK, ChedinF, HsiehCL, WilsonTE, LieberMR. R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells. Nat Immunol2003; 4(5): 442–451 doi: 10.1038/ni919 pmid: 12679812
|
35 |
MasukataH, TomizawaJ. A mechanism of formation of a persistent hybrid between elongating RNA and template DNA. Cell1990; 62(2): 331–338 doi: 10.1016/0092-8674(90)90370-T pmid: 1695550
|
36 |
LeeDY, ClaytonDA. Properties of a primer RNA-DNA hybrid at the mouse mitochondrial DNA leading-strand origin of replication. J Biol Chem1996; 271(39): 24262–24269 doi: 10.1074/jbc.271.39.24262 pmid: 8798672
|
37 |
MartomoSA, YangWW, GearhartPJ. A role for Msh6 but not Msh3 in somatic hypermutation and class switch recombination. J Exp Med2004; 200(1): 61–68 doi: 10.1084/jem.20040691 pmid: 15238605
|
38 |
NeubergerMS, RadaC. Somatic hypermutation: activation-induced deaminase for C/G followed by polymerase eta for A/T. J Exp Med2007; 204(1): 7–10 doi: 10.1084/jem.20062409 pmid: 17190841
|
39 |
RadaC, Di NoiaJM, NeubergerMS. Mismatch recognition and uracil excision provide complementary paths to both Ig switching and the A/T-focused phase of somatic mutation. Mol Cell2004; 16(2): 163–171 doi: 10.1016/j.molcel.2004.10.011 pmid: 15494304
|
40 |
RadaC, EhrensteinMR, NeubergerMS, MilsteinC. Hot spot focusing of somatic hypermutation in MSH2-deficient mice suggests two stages of mutational targeting. Immunity1998; 9(1): 135–141 doi: 10.1016/S1074-7613(00)80595-6 pmid: 9697843
|
41 |
RadaC, WilliamsGT, NilsenH, BarnesDE, LindahlT, NeubergerMS. Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice. Curr Biol2002; 12(20): 1748–1755 doi: 10.1016/S0960-9822(02)01215-0 pmid: 12401169
|
42 |
ShenHM, TanakaA, BozekG, NicolaeD, StorbU. Somatic hypermutation and class switch recombination in Msh6(-/-)Ung(-/-) double-knockout mice. J Immunol2006; 177(8): 5386–5392 pmid: 17015724
|
43 |
XueK, RadaC, NeubergerMS. The in vivo pattern of AID targeting to immunoglobulin switch regions deduced from mutation spectra in msh2-/-ung-/- mice. J Exp Med2006; 203(9): 2085–2094 doi: 10.1084/jem.20061067 pmid: 16894013
|
44 |
GuikemaJE, LinehanEK, TsuchimotoD, NakabeppuY, StraussPR, StavnezerJ, SchraderCE. APE1- and APE2-dependent DNA breaks in immunoglobulin class switch recombination. J Exp Med2007; 204(12): 3017–3026 doi: 10.1084/jem.20071289 pmid: 18025127
|
45 |
SabouriZ, OkazakiIM, ShinkuraR, BegumN, NagaokaH, TsuchimotoD, NakabeppuY, HonjoT. Apex2 is required for efficient somatic hypermutation but not for class switch recombination of immunoglobulin genes. Int Immunol2009; 21(8): 947–955 doi: 10.1093/intimm/dxp061 pmid: 19556307
|
46 |
SchraderCE1, GuikemaJE, WuX, StavnezerJ. The roles of APE1, APE2, DNA polymerase beta and mismatch repair in creating S region DNA breaks during antibody class switch. Philos Trans R Soc Lond B Biol Sci, 2009. 364(1517) 645–652 pmid: 19010771
|
47 |
LudwigDL, MacInnesMA, TakiguchiY, PurtymunPE, HenrieM, FlanneryM, MenesesJ, PedersenRA, ChenDJ. A murine AP-endonuclease gene-targeted deficiency with post-implantation embryonic progression and ionizing radiation sensitivity. Mutat Res1998; 409(1): 17–29 doi: 10.1016/S0921-8777(98)00039-1 pmid: 9806499
|
48 |
XanthoudakisS, SmeyneRJ, WallaceJD, CurranT. The redox/DNA repair protein, Ref-1, is essential for early embryonic development in mice. Proc Natl Acad Sci USA1996; 93(17): 8919–8923 doi: 10.1073/pnas.93.17.8919 pmid: 8799128
|
49 |
MasaniS, HanL, YuK. Apurinic/apyrimidinic endonuclease 1 is the essential nuclease during immunoglobulin class switch recombination. Mol Cell Biol2013; 33(7): 1468–1473 doi: 10.1128/MCB.00026-13 pmid: 23382073
|
50 |
ChahwanR, van OersJM, AvdievichE, ZhaoC, EdelmannW, ScharffMD, RoaS. The ATPase activity of MLH1 is required to orchestrate DNA double-strand breaks and end processing during class switch recombination. J Exp Med2012; 209(4): 671–678 doi: 10.1084/jem.20111531 pmid: 22451719
|
51 |
LongerichS, BasuU, AltF, StorbU. AID in somatic hypermutation and class switch recombination. Curr Opin Immunol2006; 18(2): 164–174 doi: 10.1016/j.coi.2006.01.008 pmid: 16464563
|
52 |
OdegardVH, SchatzDG. Targeting of somatic hypermutation. Nat Rev Immunol2006; 6(8): 573–583 doi: 10.1038/nri1896 pmid: 16868548
|
53 |
LiuM, DukeJL, RichterDJ, VinuesaCG, GoodnowCC, KleinsteinSH, SchatzDG. Two levels of protection for the B cell genome during somatic hypermutation. Nature2008; 451(7180): 841–845 doi: 10.1038/nature06547 pmid: 18273020
|
54 |
PasqualucciL, MigliazzaA, FracchiollaN, WilliamC, NeriA, BaldiniL, ChagantiRS, KleinU, KüppersR, RajewskyK, Dalla-FaveraR. BCL-6 mutations in normal germinal center B cells: evidence of somatic hypermutation acting outside Ig loci. Proc Natl Acad Sci USA1998; 95(20): 11816–11821 doi: 10.1073/pnas.95.20.11816 pmid: 9751748
|
55 |
ShenHM, PetersA, BaronB, ZhuX, StorbU. Mutation of BCL-6 gene in normal B cells by the process of somatic hypermutation of Ig genes. Science1998; 280(5370): 1750–1752 doi: 10.1126/science.280.5370.1750 pmid: 9624052
|
56 |
PengHZ, DuMQ, KoulisA, AielloA, DoganA, PanLX, IsaacsonPG. Nonimmunoglobulin gene hypermutation in germinal center B cells. Blood1999; 93(7): 2167–2172 pmid: 10090923
|
57 |
StorbU, ShenHM, MichaelN, KimN. Somatic hypermutation of immunoglobulin and non-immunoglobulin genes. Philos Trans R Soc Lond B Biol Sci2001; 356(1405): 13–19 doi: 10.1098/rstb.2000.0743 pmid: 11205325
|
58 |
GordonMS, KanegaiCM, DoerrJR, WallR. Somatic hypermutation of the B cell receptor genes B29 (Igβ, CD79b) and mb1 (Igα, CD79a). Proc Natl Acad Sci USA2003; 100(7): 4126–4131 doi: 10.1073/pnas.0735266100 pmid: 12651942
|
59 |
DelkerRK, FugmannSD, PapavasiliouFN. A coming-of-age story: activation-induced cytidine deaminase turns 10. Nat Immunol2009; 10(11): 1147–1153 doi: 10.1038/ni.1799 pmid: 19841648
|
60 |
RogozinIB, KolchanovNA. Somatic hypermutagenesis in immunoglobulin genes. II. Influence of neighbouring base sequences on mutagenesis. Biochim Biophys Acta1992; 1171(1): 11–18 doi: 10.1016/0167-4781(92)90134-L pmid: 1420357
|
61 |
RogozinIB, PavlovYI, BebenekK, MatsudaT, KunkelTA. Somatic mutation hotspots correlate with DNA polymerase eta error spectrum. Nat Immunol2001; 2(6): 530–536 doi: 10.1038/88732 pmid: 11376340
|
62 |
KlotzEL, HackettJ Jr, StorbU. Somatic hypermutation of an artificial test substrate within an Igκ transgene. J Immunol1998; 161(2): 782–790 pmid: 9670955
|
63 |
StorbU, KlotzEL, HackettJ Jr, KageK, BozekG, MartinTE. A hypermutable insert in an immunoglobulin transgene contains hotspots of somatic mutation and sequences predicting highly stable structures in the RNA transcript. J Exp Med1998; 188(4): 689–698 doi: 10.1084/jem.188.4.689 pmid: 9705951
|
64 |
MichaelN, MartinTE, NicolaeD, KimN, PadjenK, ZhanP, NguyenH, PinkertC, StorbU. Effects of sequence and structure on the hypermutability of immunoglobulin genes. Immunity2002; 16(1): 123–134 doi: 10.1016/S1074-7613(02)00261-3 pmid: 11825571
|
65 |
YélamosJ, KlixN, GoyenecheaB, LozanoF, ChuiYL, González FernándezA, PannellR, NeubergerMS, MilsteinC. Targeting of non-Ig sequences in place of the V segment by somatic hypermutation. Nature1995; 376(6537): 225–229 doi: 10.1038/376225a0 pmid: 7617031
|
66 |
JollyCJ, NeubergerMS. Somatic hypermutation of immunoglobulin κ transgenes: association of mutability with demethylation. Immunol Cell Biol2001; 79(1): 18–22 doi: 10.1046/j.1440-1711.2001.00968.x pmid: 11168618
|
67 |
ChenZ, ViboolsittiseriSS, O’ConnorBP, WangJH. Target DNA sequence directly regulates the frequency of activation-induced deaminase-dependent mutations. J Immunol2012; 189(8): 3970–3982 doi: 10.4049/jimmunol.1200416 pmid: 22962683
|
68 |
MutoT, OkazakiIM, YamadaS, TanakaY, KinoshitaK, MuramatsuM, NagaokaH, HonjoT. Negative regulation of activation-induced cytidine deaminase in B cells. Proc Natl Acad Sci USA2006; 103(8): 2752–2757 doi: 10.1073/pnas.0510970103 pmid: 16477013
|
69 |
WangL, WuerffelR, FeldmanS, KhamlichiAA, KenterAL. S region sequence, RNA polymerase II, and histone modifications create chromatin accessibility during class switch recombination. J Exp Med2009; 206(8): 1817–1830 doi: 10.1084/jem.20081678 pmid: 19596805
|
70 |
PavriR, GazumyanA, JankovicM, Di VirgilioM, KleinI, Ansarah-SobrinhoC, ReschW, YamaneA, Reina San-MartinB, BarretoV, NielandTJ, RootDE, CasellasR, NussenzweigMC. Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5. Cell2010; 143(1): 122–133 doi: 10.1016/j.cell.2010.09.017 pmid: 20887897
|
71 |
StanlieA, AidaM, MuramatsuM, HonjoT, BegumNA. Histone3 lysine4 trimethylation regulated by the facilitates chromatin transcription complex is critical for DNA cleavage in class switch recombination. Proc Natl Acad Sci USA2010; 107(51): 22190–22195 doi: 10.1073/pnas.1016923108 pmid: 21139053
|
72 |
DanielJA, SantosMA, WangZ, ZangC, SchwabKR, JankovicM, FilsufD, ChenHT, GazumyanA, YamaneA, ChoYW, SunHW, GeK, PengW, NussenzweigMC, CasellasR, DresslerGR, ZhaoK, NussenzweigA. PTIP promotes chromatin changes critical for immunoglobulin class switch recombination. Science2010; 329(5994): 917–923 doi: 10.1126/science.1187942 pmid: 20671152
|
73 |
Jeevan-RajBP, RobertI, HeyerV, PageA, WangJH, CammasF, AltFW, LossonR, Reina-San-MartinB. Epigenetic tethering of AID to the donor switch region during immunoglobulin class switch recombination. J Exp Med2011; 208(8): 1649–1660 doi: 10.1084/jem.20110118 pmid: 21746811
|
74 |
YamaneA, ReschW, KuoN, KuchenS, LiZ, SunHW, RobbianiDF, McBrideK, NussenzweigMC, CasellasR. Deep-sequencing identification of the genomic targets of the cytidine deaminase AID and its cofactor RPA in B lymphocytes. Nat Immunol2011; 12(1): 62–69 doi: 10.1038/ni.1964 pmid: 21113164
|
75 |
BetzAG, MilsteinC, González-FernándezA, PannellR, LarsonT, NeubergerMS. Elements regulating somatic hypermutation of an immunoglobulin kappa gene: critical role for the intron enhancer/matrix attachment region. Cell1994; 77(2): 239–248 doi: 10.1016/0092-8674(94)90316-6 pmid: 8168132
|
76 |
InlayMA, GaoHH, OdegardVH, LinT, SchatzDG, XuY. Roles of the Igκ light chain intronic and 3′ enhancers in Igk somatic hypermutation. J Immunol2006; 177(2): 1146–1151 pmid: 16818772
|
77 |
KothapalliNR, FugmannSD. Targeting of AID-mediated sequence diversification to immunoglobulin genes. Curr Opin Immunol2011; 23(2): 184–189 doi: 10.1016/j.coi.2010.12.009 pmid: 21295456
|
78 |
PerlotT, AltFW, BassingCH, SuhH, PinaudE. Elucidation of IgH intronic enhancer functions via germ-line deletion. Proc Natl Acad Sci USA2005; 102(40): 14362–14367 doi: 10.1073/pnas.0507090102 pmid: 16186486
|
79 |
FukitaY, JacobsH, RajewskyK. Somatic hypermutation in the heavy chain locus correlates with transcription. Immunity1998; 9(1): 105–114 doi: 10.1016/S1074-7613(00)80592-0 pmid: 9697840
|
80 |
KothapalliNR, ColluraKM, NortonDD, FugmannSD. Separation of mutational and transcriptional enhancers in Ig genes. J Immunol2011; 187(6): 3247–3255 doi: 10.4049/jimmunol.1101568 pmid: 21844395
|
81 |
KothapalliNR, NortonDD, FugmannSD. Classical Mus musculus Igκ enhancers support transcription but not high level somatic hypermutation from a V-lambda promoter in chicken DT40 cells. PLoS ONE2011; 6(4): e18955 doi: 10.1371/journal.pone.0018955 pmid: 21533098
|
82 |
StorbU, PetersA, KlotzE, KimN, ShenHM, HackettJ, RogersonB, MartinTE. Cis-acting sequences that affect somatic hypermutation of Ig genes. Immunol Rev1998; 162(1): 153–160 doi: 10.1111/j.1600-065X.1998.tb01438.x pmid: 9602361
|
83 |
KodgireP, MukkawarP, RatnamS, MartinTE, StorbU. Changes in RNA polymerase II progression influence somatic hypermutation of Ig-related genes by AID. J Exp Med2013; 210(7): 1481–1492 doi: 10.1084/jem.20121523 pmid: 23752228
|
84 |
AidaM, HamadN, StanlieA, BegumNA, HonjoT. Accumulation of the FACT complex, as well as histone H3.3, serves as a target marker for somatic hypermutation. Proc Natl Acad Sci USA2013; 110(19): 7784–7789 doi: 10.1073/pnas.1305859110 pmid: 23610419
|
85 |
MorvanCL, PinaudE, DecourtC, CuvillierA, CognéM. The immunoglobulin heavy-chain locus hs3b and hs4 3′ enhancers are dispensable for VDJ assembly and somatic hypermutation. Blood2003; 102(4): 1421–1427 doi: 10.1182/blood-2002-12-3827 pmid: 12714490
|
86 |
RouaudP, Vincent-FabertC, SaintamandA, FiancetteR, MarquetM, RobertI, Reina-San-MartinB, PinaudE, CognéM, DenizotY. The IgH 3′ regulatory region controls somatic hypermutation in germinal center B cells. J Exp Med2013; 210(8): 1501–1507 doi: 10.1084/jem.20130072 pmid: 23825188
|
87 |
McDonaldJJ, AlinikulaJ, BuersteddeJM, SchatzDG. A critical context-dependent role for E boxes in the targeting of somatic hypermutation. J Immunol2013; 191(4): 1556–1566 doi: 10.4049/jimmunol.1300969 pmid: 23836058
|
88 |
KohlerKM, McDonaldJJ, DukeJL, ArakawaH, TanS, KleinsteinSH, BuersteddeJM, SchatzDG. Identification of core DNA elements that target somatic hypermutation. J Immunol2012; 189(11): 5314–5326 doi: 10.4049/jimmunol.1202082 pmid: 23087403
|
89 |
BlagodatskiA, BatrakV, SchmidlS, SchoetzU, CaldwellRB, ArakawaH, BuersteddeJM. A cis-acting diversification activator both necessary and sufficient for AID-mediated hypermutation. PLoS Genet2009; 5(1): e1000332 doi: 10.1371/journal.pgen.1000332 pmid: 19132090
|
90 |
KothapalliN, NortonDD, FugmannSD. Cutting edge: a cis-acting DNA element targets AID-mediated sequence diversification to the chicken Ig light chain gene locus. J Immunol2008; 180(4): 2019–2023 pmid: 18250404
|
91 |
TanakaA, ShenHM, RatnamS, KodgireP, StorbU. Attracting AID to targets of somatic hypermutation. J Exp Med2010; 207(2): 405–415 doi: 10.1084/jem.20090821 pmid: 20100870
|
92 |
GazumyanA, BothmerA, KleinIA, NussenzweigMC, McBrideKM. Activation-induced cytidine deaminase in antibody diversification and chromosome translocation. Adv Cancer Res2012; 113: 167–190 doi: 10.1016/B978-0-12-394280-7.00005-1 pmid: 22429855
|
93 |
KüppersR, Dalla-FaveraR. Mechanisms of chromosomal translocations in B cell lymphomas. Oncogene2001; 20(40): 5580–5594 doi: 10.1038/sj.onc.1204640 pmid: 11607811
|
94 |
JanzS. Myc translocations in B cell and plasma cell neoplasms. DNA Repair (Amst)2006; 5(9-10): 1213–1224 doi: 10.1016/j.dnarep.2006.05.017 pmid: 16815105
|
95 |
KüppersR. Mechanisms of B-cell lymphoma pathogenesis. Nat Rev Cancer2005; 5(4): 251–262 doi: 10.1038/nrc1589 pmid: 15803153
|
96 |
ShenHM, MichaelN, KimN, StorbU. The TATA binding protein, c-Myc and survivin genes are not somatically hypermutated, while Ig and BCL6 genes are hypermutated in human memory B cells. Int Immunol2000; 12(7): 1085–1093 doi: 10.1093/intimm/12.7.1085 pmid: 10882420
|
97 |
CaladoDP, SasakiY, GodinhoSA, PellerinA, KöchertK, SleckmanBP, de AlboránIM, JanzM, RodigS, RajewskyK. The cell-cycle regulator c-Myc is essential for the formation and maintenance of germinal centers. Nat Immunol2012; 13(11): 1092–1100 doi: 10.1038/ni.2418 pmid: 23001146
|
98 |
ShilohY. ATM and related protein kinases: safeguarding genome integrity. Nat Rev Cancer2003; 3(3): 155–168 doi: 10.1038/nrc1011 pmid: 12612651
|
99 |
ShilohY, ZivY. The ATM protein kinase: regulating the cellular response to genotoxic stress, and more. Nat Rev Mol Cell Biol2013; 14(4): 197–210 doi: 10.1038/nrm3546
|
100 |
BassingCH, AltFW. H2AX may function as an anchor to hold broken chromosomal DNA ends in close proximity. Cell Cycle2004; 3(2): 149–153 doi: 10.4161/cc.3.2.684 pmid: 14712078
|
101 |
FrancoS, AltFW, ManisJP. Pathways that suppress programmed DNA breaks from progressing to chromosomal breaks and translocations. DNA Repair (Amst)2006; 5(9-10): 1030–1041 doi: 10.1016/j.dnarep.2006.05.024 pmid: 16934538
|
102 |
RogakouEP, PilchDR, OrrAH, IvanovaVS, BonnerWM. DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139. J Biol Chem1998; 273(10): 5858–5868 doi: 10.1074/jbc.273.10.5858 pmid: 9488723
|
103 |
ChapmanJR, BarralP, VannierJB, BorelV, StegerM, Tomas-LobaA, SartoriAA, AdamsIR, BatistaFD, BoultonSJ. RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection. Mol Cell2013; 49(5): 858–871 doi: 10.1016/j.molcel.2013.01.002 pmid: 23333305
|
104 |
Di VirgilioM, CallenE, YamaneA, ZhangW, JankovicM, GitlinAD, FeldhahnN, ReschW, OliveiraTY, ChaitBT, NussenzweigA, CasellasR, RobbianiDF, NussenzweigMC. Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching. Science2013; 339(6120): 711–715 doi: 10.1126/science.1230624 pmid: 23306439
|
105 |
Escribano-DíazC, OrthweinA, Fradet-TurcotteA, XingM, YoungJT, TkáčJ, CookMA, RosebrockAP, MunroM, CannyMD, XuD, DurocherD. A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice. Mol Cell2013; 49(5): 872–883 doi: 10.1016/j.molcel.2013.01.001 pmid: 23333306
|
106 |
FrancoS, GostissaM, ZhaS, LombardDB, MurphyMM, ZarrinAA, YanC, TepsupornS, MoralesJC, AdamsMM, LouZ, BassingCH, ManisJP, ChenJ, CarpenterPB, AltFW. H2AX prevents DNA breaks from progressing to chromosome breaks and translocations. Mol Cell2006; 21(2): 201–214 doi: 10.1016/j.molcel.2006.01.005 pmid: 16427010
|
107 |
RamiroAR, JankovicM, CallenE, DifilippantonioS, ChenHT, McBrideKM, EisenreichTR, ChenJ, DickinsRA, LoweSW, NussenzweigA, NussenzweigMC. Role of genomic instability and p53 in AID-induced c-myc-Igh translocations. Nature2006; 440(7080): 105–109 doi: 10.1038/nature04495 pmid: 16400328
|
108 |
ManisJP, MoralesJC, XiaZ, KutokJL, AltFW, CarpenterPB. 53BP1 links DNA damage-response pathways to immunoglobulin heavy chain class-switch recombination. Nat Immunol2004; 5(5): 481–487 doi: 10.1038/ni1067 pmid: 15077110
|
109 |
WardIM, Reina-San-MartinB, OlaruA, MinnK, TamadaK, LauJS, CascalhoM, ChenL, NussenzweigA, LivakF, NussenzweigMC, ChenJ. 53BP1 is required for class switch recombination. J Cell Biol2004; 165(4): 459–464 doi: 10.1083/jcb.200403021 pmid: 15159415
|
110 |
Reina-San-MartinB, ChenJ, NussenzweigA, NussenzweigMC. Enhanced intra-switch region recombination during immunoglobulin class switch recombination in 53BP1-/- B cells. Eur J Immunol2007; 37(1): 235–239 doi: 10.1002/eji.200636789 pmid: 17183606
|
111 |
BothmerA, RobbianiDF, Di VirgilioM, BuntingSF, KleinIA, FeldhahnN, BarlowJ, ChenHT, BosqueD, CallenE, NussenzweigA, NussenzweigMC. Regulation of DNA end joining, resection, and immunoglobulin class switch recombination by 53BP1. Mol Cell2011; 42(3): 319–329 doi: 10.1016/j.molcel.2011.03.019 pmid: 21549309
|
112 |
BothmerA, RobbianiDF, FeldhahnN, GazumyanA, NussenzweigA, NussenzweigMC. 53BP1 regulates DNA resection and the choice between classical and alternative end joining during class switch recombination. J Exp Med2010; 207(4): 855–865 doi: 10.1084/jem.20100244 pmid: 20368578
|
113 |
ChapmanJR, TaylorMR, BoultonSJ. Playing the end game: DNA double-strand break repair pathway choice. Mol Cell2012; 47(4): 497–510 doi: 10.1016/j.molcel.2012.07.029 pmid: 22920291
|
114 |
BothmerA, RommelPC, GazumyanA, PolatoF, ReczekCR, MuellenbeckMF, SchaetzleinS, EdelmannW, ChenPL, BroshRM Jr, CasellasR, LudwigT, BaerR, NussenzweigA, NussenzweigMC, RobbianiDF. Mechanism of DNA resection during intrachromosomal recombination and immunoglobulin class switching. J Exp Med2013; 210(1): 115–123 doi: 10.1084/jem.20121975 pmid: 23254285
|
115 |
StavnezerJ, BjörkmanA, DuL, CagigiA, Pan-HammarströmQ. Mapping of switch recombination junctions, a tool for studying DNA repair pathways during immunoglobulin class switching. Adv Immunol2010; 108: 45–109 doi: 10.1016/B978-0-12-380995-7.00003-3 pmid: 21056729
|
116 |
LieberMR. The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem2010; 79(1): 181–211 doi: 10.1146/annurev.biochem.052308.093131 pmid: 20192759
|
117 |
LieberMR, GuJ, LuH, ShimazakiN, TsaiAG. Nonhomologous DNA end joining (NHEJ) and chromosomal translocations in humans. Subcell Biochem2010; 50: 279–296 doi: 10.1007/978-90-481-3471-7_14 pmid: 20012587
|
118 |
WeinstockDM, RichardsonCA, ElliottB, JasinM. Modeling oncogenic translocations: distinct roles for double-strand break repair pathways in translocation formation in mammalian cells. DNA Repair (Amst)2006; 5(9-10): 1065–1074 doi: 10.1016/j.dnarep.2006.05.028 pmid: 16815104
|
119 |
WestSC. Molecular views of recombination proteins and their control. Nat Rev Mol Cell Biol2003; 4(6): 435–445 doi: 10.1038/nrm1127 pmid: 12778123
|
120 |
SymingtonLS, GautierJ. Double-strand break end resection and repair pathway choice. Annu Rev Genet2011; 45(1): 247–271 doi: 10.1146/annurev-genet-110410-132435 pmid: 21910633
|
121 |
CallenE, Di VirgilioM, KruhlakMJ, Nieto-SolerM, WongN, ChenHT, FaryabiRB, PolatoF, SantosM, StarnesLM, WesemannDR, LeeJE, TubbsA, SleckmanBP, DanielJA, GeK, AltFW, Fernandez-CapetilloO, NussenzweigMC, NussenzweigA. 53BP1 mediates productive and mutagenic DNA repair through distinct phosphoprotein interactions. Cell2013; 153(6): 1266–1280 doi: 10.1016/j.cell.2013.05.023 pmid: 23727112
|
122 |
RooneyS, ChaudhuriJ, AltFW. The role of the non-homologous end-joining pathway in lymphocyte development. Immunol Rev2004; 200(1): 115–131 doi: 10.1111/j.0105-2896.2004.00165.x pmid: 15242400
|
123 |
RothDB. Restraining the V(D)J recombinase. Nat Rev Immunol2003; 3(8): 656–666 doi: 10.1038/nri1152 pmid: 12974480
|
124 |
YanCT, BoboilaC, SouzaEK, FrancoS, HickernellTR, MurphyM, GumasteS, GeyerM, ZarrinAA, ManisJP, RajewskyK, AltFW. IgH class switching and translocations use a robust non-classical end-joining pathway. Nature2007; 449(7161): 478–482 doi: 10.1038/nature06020 pmid: 17713479
|
125 |
WangJH, GostissaM, YanCT, GoffP, HickernellT, HansenE, DifilippantonioS, WesemannDR, ZarrinAA, RajewskyK, NussenzweigA, AltFW. Mechanisms promoting translocations in editing and switching peripheral B cells. Nature2009; 460(7252): 231–236 doi: 10.1038/nature08159 pmid: 19587764
|
126 |
BoboilaC, YanC, WesemannDR, JankovicM, WangJH, ManisJ, NussenzweigA, NussenzweigM, AltFW. Alternative end-joining catalyzes class switch recombination in the absence of both Ku70 and DNA ligase 4. J Exp Med2010; 207(2): 417–427 doi: 10.1084/jem.20092449 pmid: 20142431
|
127 |
BoboilaC, JankovicM, YanCT, WangJH, WesemannDR, ZhangT, FazeliA, FeldmanL, NussenzweigA, NussenzweigM, AltFW. Alternative end-joining catalyzes robust IgH locus deletions and translocations in the combined absence of ligase 4 and Ku70. Proc Natl Acad Sci USA2010; 107(7): 3034–3039 doi: 10.1073/pnas.0915067107 pmid: 20133803
|
128 |
DifilippantonioMJ, PetersenS, ChenHT, JohnsonR, JasinM, KanaarR, RiedT, NussenzweigA. Evidence for replicative repair of DNA double-strand breaks leading to oncogenic translocation and gene amplification. J Exp Med2002; 196(4): 469–480 doi: 10.1084/jem.20020851 pmid: 12186839
|
129 |
RooneyS, SekiguchiJ, WhitlowS, EckersdorffM, ManisJP, LeeC, FergusonDO, AltFW. Artemis and p53 cooperate to suppress oncogenic N-myc amplification in progenitor B cells. Proc Natl Acad Sci USA2004; 101(8): 2410–2415 doi: 10.1073/pnas.0308757101 pmid: 14983023
|
130 |
WangJH, AltFW, GostissaM, DattaA, MurphyM, AlimzhanovMB, CoakleyKM, RajewskyK, ManisJP, YanCT. Oncogenic transformation in the absence of Xrcc4 targets peripheral B cells that have undergone editing and switching. J Exp Med2008; 205(13): 3079–3090 doi: 10.1084/jem.20082271 pmid: 19064702
|
131 |
ZhuC, MillsKD, FergusonDO, LeeC, ManisJ, FlemingJ, GaoY, MortonCC, AltFW. Unrepaired DNA breaks in p53-deficient cells lead to oncogenic gene amplification subsequent to translocations. Cell2002; 109(7): 811–821 doi: 10.1016/S0092-8674(02)00770-5 pmid: 12110179
|
132 |
McVeyM, LeeSE. MMEJ repair of double-strand breaks (director’s cut): deleted sequences and alternative endings. Trends Genet2008; 24(11): 529–538 doi: 10.1016/j.tig.2008.08.007 pmid: 18809224
|
133 |
DerianoL, StrackerTH, BakerA, PetriniJH, RothDB. Roles for NBS1 in alternative nonhomologous end-joining of V(D)J recombination intermediates. Mol Cell2009; 34(1): 13–25 doi: 10.1016/j.molcel.2009.03.009 pmid: 19362533
|
134 |
DinkelmannM, SpehalskiE, StonehamT, BuisJ, WuY, SekiguchiJM, FergusonDO. Multiple functions of MRN in end-joining pathways during isotype class switching. Nat Struct Mol Biol2009; 16(8): 808–813 doi: 10.1038/nsmb.1639 pmid: 19633670
|
135 |
RassE, GrabarzA, PloI, GautierJ, BertrandP, LopezBS. Role of Mre11 in chromosomal nonhomologous end joining in mammalian cells. Nat Struct Mol Biol2009; 16(8): 819–824 doi: 10.1038/nsmb.1641 pmid: 19633668
|
136 |
XieA, KwokA, ScullyR. Role of mammalian Mre11 in classical and alternative nonhomologous end joining. Nat Struct Mol Biol2009; 16(8): 814–818 doi: 10.1038/nsmb.1640 pmid: 19633669
|
137 |
Lee-TheilenM, MatthewsAJ, KellyD, ZhengS, ChaudhuriJ. CtIP promotes microhomology-mediated alternative end joining during class-switch recombination. Nat Struct Mol Biol2011; 18(1): 75–79 doi: 10.1038/nsmb.1942 pmid: 21131982
|
138 |
ZhangY, JasinM. An essential role for CtIP in chromosomal translocation formation through an alternative end-joining pathway. Nat Struct Mol Biol2011; 18(1): 80–84 doi: 10.1038/nsmb.1940 pmid: 21131978
|
139 |
Della-MariaJ, ZhouY, TsaiMS, KuhnleinJ, CarneyJP, PaullTT, TomkinsonAE. Human Mre11/human Rad50/Nbs1 and DNA ligase IIIalpha/XRCC1 protein complexes act together in an alternative nonhomologous end joining pathway. J Biol Chem2011; 286(39): 33845–33853 doi: 10.1074/jbc.M111.274159 pmid: 21816818
|
140 |
SaribasakH, MaulRW, CaoZ, McClureRL, YangW, McNeillDR, WilsonDM 3rd, GearhartPJ. XRCC1 suppresses somatic hypermutation and promotes alternative nonhomologous end joining in Igh genes. J Exp Med2011; 208(11): 2209–2216 doi: 10.1084/jem.20111135 pmid: 21967769
|
141 |
SimsekD, BrunetE, WongSY, KatyalS, GaoY, McKinnonPJ, LouJ, ZhangL, LiJ, RebarEJ, GregoryPD, HolmesMC, JasinM. DNA ligase III promotes alternative nonhomologous end-joining during chromosomal translocation formation. PLoS Genet2011; 7(6): e1002080 doi: 10.1371/journal.pgen.1002080 pmid: 21655080
|
142 |
CaldecottKW. XRCC1 and DNA strand break repair. DNA Repair (Amst)2003; 2(9): 955–969 doi: 10.1016/S1568-7864(03)00118-6 pmid: 12967653
|
143 |
BoboilaC, OksenychV, GostissaM, WangJH, ZhaS, ZhangY, ChaiH, LeeCS, JankovicM, SaezLM, NussenzweigMC, McKinnonPJ, AltFW, SchwerB. Robust chromosomal DNA repair via alternative end-joining in the absence of X-ray repair cross-complementing protein 1 (XRCC1). Proc Natl Acad Sci USA2012; 109(7): 2473–2478 doi: 10.1073/pnas.1121470109 pmid: 22308491
|
144 |
JungD, GiallourakisC, Mostoslavs kyR, AltFW. Mechanism and control of V(D)J recombination at the immunoglobulin heavy chain locus. Annu Rev Immunol2006; 24(1): 541–570 doi: 10.1146/annurev.immunol.23.021704.115830 pmid: 16551259
|
145 |
WangJH. Mechanisms and impacts of chromosomal translocations in cancers. Front Med2012; 6(3): 263–274 doi: 10.1007/s11684-012-0215-5 pmid: 22865120
|
146 |
RamiroAR, JankovicM, EisenreichT, DifilippantonioS, Chen-KiangS, MuramatsuM, HonjoT, NussenzweigA, NussenzweigMC. AID is required for c-myc/IgH chromosome translocations in vivo. Cell2004; 118(4): 431–438 doi: 10.1016/j.cell.2004.08.006 pmid: 15315756
|
147 |
PasqualucciL, NeumeisterP, GoossensT, NanjangudG, ChagantiRS, KüppersR, Dalla-FaveraR. Hypermutation of multiple proto-oncogenes in B-cell diffuse large-cell lymphomas. Nature2001; 412(6844): 341–346 doi: 10.1038/35085588 pmid: 11460166
|
148 |
OhnoH. Pathogenetic and clinical implications of non-immunoglobulin; BCL6 translocations in B-cell non-Hodgkin’s lymphoma. J Clin Exp Hematop2006; 46(2): 43–53 doi: 10.3960/jslrt.46.43 pmid: 17142954
|
149 |
BertrandP, BastardC, MaingonnatC, JardinF, MaisonneuveC, CourelMN, RuminyP, PicquenotJM, TillyH. Mapping of MYC breakpoints in 8q24 rearrangements involving non-immunoglobulin partners in B-cell lymphomas. Leukemia2007; 21(3): 515–523 doi: 10.1038/sj.leu.2404529 pmid: 17230227
|
150 |
RobbianiDF, BothmerA, CallenE, Reina-San-MartinB, DorsettY, DifilippantonioS, BollandDJ, ChenHT, CorcoranAE, NussenzweigA, NussenzweigMC. AID is required for the chromosomal breaks in c-myc that lead to c-myc/IgH translocations. Cell2008; 135(6): 1028–1038 doi: 10.1016/j.cell.2008.09.062 pmid: 19070574
|
151 |
RobbianiDF, BuntingS, FeldhahnN, BothmerA, CampsJ, DeroubaixS, McBrideKM, KleinIA, StoneG, EisenreichTR, RiedT, NussenzweigA, NussenzweigMC. AID produces DNA double-strand breaks in non-Ig genes and mature B cell lymphomas with reciprocal chromosome translocations. Mol Cell2009; 36(4): 631–641 doi: 10.1016/j.molcel.2009.11.007 pmid: 19941823
|
152 |
ChiarleR, ZhangY, FrockRL, LewisSM, MolinieB, HoYJ, MyersDR, ChoiVW, CompagnoM, MalkinDJ, NeubergD, MontiS, GiallourakisCC, GostissaM, AltFW. Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells. Cell2011; 147(1): 107–119 doi: 10.1016/j.cell.2011.07.049 pmid: 21962511
|
153 |
KleinIA, ReschW, JankovicM, OliveiraT, YamaneA, NakahashiH, Di VirgilioM, BothmerA, NussenzweigA, RobbianiDF, CasellasR, NussenzweigMC. Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes. Cell2011; 147(1): 95–106 doi: 10.1016/j.cell.2011.07.048 pmid: 21962510
|
154 |
StaszewskiO, BakerRE, UcherAJ, MartierR, StavnezerJ, GuikemaJE. Activation-induced cytidine deaminase induces reproducible DNA breaks at many non-Ig Loci in activated B cells. Mol Cell2011; 41(2): 232–242 doi: 10.1016/j.molcel.2011.01.007 pmid: 21255732
|
155 |
MuramatsuM, SankaranandVS, AnantS, SugaiM, KinoshitaK, DavidsonNO, HonjoT. Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells. J Biol Chem1999; 274(26): 18470–18476 doi: 10.1074/jbc.274.26.18470 pmid: 10373455
|
156 |
CrouchEE, LiZ, TakizawaM, Fichtner-FeiglS, GourziP, MontañoC, FeigenbaumL, WilsonP, JanzS, PapavasiliouFN, CasellasR. Regulation of AID expression in the immune response. J Exp Med2007; 204(5): 1145–1156 doi: 10.1084/jem.20061952 pmid: 17452520
|
157 |
GourziP, LeonovaT, PapavasiliouFN. A role for activation-induced cytidine deaminase in the host response against a transforming retrovirus. Immunity2006; 24(6): 779–786 doi: 10.1016/j.immuni.2006.03.021 pmid: 16782033
|
158 |
SzczylikC, SkorskiT, NicolaidesNC, ManzellaL, MalaguarneraL, VenturelliD, GewirtzAM, CalabrettaB. Selective inhibition of leukemia cell proliferation by BCR-ABL antisense oligodeoxynucleotides. Science1991; 253(5019): 562–565 doi: 10.1126/science. pmid: 1857987
|
159 |
Van EttenRA, JacksonP, BaltimoreD. The mouse type IV c-abl gene product is a nuclear protein, and activation of transforming ability is associated with cytoplasmic localization. Cell1989; 58(4): 669–678 doi: 10.1016/0092-8674(89)90102-5 pmid: 2670246
|
160 |
Quintás-CardamaA, CortesJ. Molecular biology of bcr-abl1-positive chronic myeloid leukemia. Blood2009; 113(8): 1619–1630 doi: 10.1182/blood-2008-03-144790 pmid: 18827185
|
161 |
FeldhahnN, HenkeN, MelchiorK, DuyC, SohBN, KleinF, von LevetzowG, GiebelB, LiA, HofmannWK, JumaaH, MüschenM. Activation-induced cytidine deaminase acts as a mutator in BCR-ABL1-transformed acute lymphoblastic leukemia cells. J Exp Med2007; 204(5): 1157–1166 doi: 10.1084/jem.20062662 pmid: 17485517
|
162 |
KlemmL, DuyC, IacobucciI, KuchenS, von LevetzowG, FeldhahnN, HenkeN, LiZ, HoffmannTK, KimYM, HofmannWK, JumaaH, GroffenJ, HeisterkampN, MartinelliG, LieberMR, CasellasR, MüschenM. The B cell mutator AID promotes B lymphoid blast crisis and drug resistance in chronic myeloid leukemia. Cancer Cell2009; 16(3): 232–245 doi: 10.1016/j.ccr.2009.07.030 pmid: 19732723
|
163 |
GruberTA, ChangMS, SpostoR, MüschenM. Activation-induced cytidine deaminase accelerates clonal evolution in BCR-ABL1-driven B-cell lineage acute lymphoblastic leukemia. Cancer Res2010; 70(19): 7411–7420 doi: 10.1158/0008-5472.CAN-10-1438 pmid: 20876806
|
164 |
YoshikawaK, OkazakiIM, EtoT, KinoshitaK, MuramatsuM, NagaokaH, HonjoT. AID enzyme-induced hypermutation in an actively transcribed gene in fibroblasts. Science2002; 296(5575): 2033–2036 doi: 10.1126/science.1071556 pmid: 12065838
|
165 |
OkazakiIM, HiaiH, KakazuN, YamadaS, MuramatsuM, KinoshitaK, HonjoT. Constitutive expression of AID leads to tumorigenesis. J Exp Med2003; 197(9): 1173–1181 doi: 10.1084/jem.20030275 pmid: 12732658
|
166 |
MorrisDS, TomlinsSA, MontieJE, ChinnaiyanAM. The discovery and application of gene fusions in prostate cancer. BJU Int2008; 102(3): 276–282 doi: 10.1111/j.1464-410X.2008.07665.x pmid: 18422767
|
167 |
ManoH. Non-solid oncogenes in solid tumors: EML4-ALK fusion genes in lung cancer. Cancer Sci2008; 99(12): 2349–2355 doi: 10.1111/j.1349-7006.2008.00972.x pmid: 19032370
|
168 |
LinC, YangL, TanasaB, HuttK, JuBG, OhgiK, ZhangJ, RoseDW, FuXD, GlassCK, RosenfeldMG. Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer. Cell2009; 139(6): 1069–1083 doi: 10.1016/j.cell.2009.11.030 pmid: 19962179
|
169 |
MatsumotoY, MarusawaH, KinoshitaK, EndoY, KouT, MorisawaT, AzumaT, OkazakiIM, HonjoT, ChibaT. Helicobacter pylori infection triggers aberrant expression of activation-induced cytidine deaminase in gastric epithelium. Nat Med2007; 13(4): 470–476 doi: 10.1038/nm1566 pmid: 17401375
|
170 |
MuñozDP, LeeEL, TakayamaS, CoppéJP, HeoSJ, BoffelliD, Di NoiaJM, MartinDI. Activation-induced cytidine deaminase (AID) is necessary for the epithelial-mesenchymal transition in mammary epithelial cells. Proc Natl Acad Sci USA2013; 110(32): E2977–E2986 doi: 10.1073/pnas.1301021110 pmid: 23882083
|
171 |
KumarR, DiMennaL, SchrodeN, LiuTC, FranckP, Muñoz-DescalzoS, HadjantonakisAK, ZarrinAA, ChaudhuriJ, ElementoO, EvansT. AID stabilizes stem-cell phenotype by removing epigenetic memory of pluripotency genes. Nature2013; 500(7460): 89–92 doi: 10.1038/nature12299 pmid: 23803762
|
172 |
BhutaniN, DeckerMN, BradyJJ, BussatRT, BurnsDM, CorbelSY, BlauHM. A critical role for AID in the initiation of reprogramming to induced pluripotent stem cells. FASEB J2013; 27(3): 1107–1113 doi: 10.1096/fj.12-222125 pmid: 23212122
|
173 |
PoppC, DeanW, FengS, CokusSJ, AndrewsS, PellegriniM, JacobsenSE, ReikW. Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature2010; 463(7284): 1101–1105 doi: 10.1038/nature08829 pmid: 20098412
|
174 |
BhutaniN, BradyJJ, DamianM, SaccoA, CorbelSY, BlauHM. Reprogramming towards pluripotency requires AID-dependent DNA demethylation. Nature2010; 463(7284): 1042–1047 doi: 10.1038/nature08752 pmid: 20027182
|
175 |
HogenbirkMA, HeidemanMR, VeldsA, van den BerkPC, KerkhovenRM, van SteenselB, JacobsH. Differential programming of B cells in AID deficient mice. PLoS ONE2013; 8(7): e69815 doi: 10.1371/journal.pone.0069815 pmid: 23922811
|
176 |
HogenbirkMA, VeldsA, KerkhovenRM, JacobsH. Reassessing genomic targeting of AID. Nat Immunol2012; 13(9): 797–798, author reply 798–800 doi: 10.1038/ni.2367 pmid: 22910380
|
177 |
VuongBQ, LeeM, KabirS, IrimiaC, MacchiaruloS, McKnightGS, ChaudhuriJ. Specific recruitment of protein kinase A to the immunoglobulin locus regulates class-switch recombination. Nat Immunol2009; 10(4): 420–426 doi: 10.1038/ni.1708 pmid: 19234474
|
178 |
BasuU, ChaudhuriJ, AlpertC, DuttS, RanganathS, LiG, SchrumJP, ManisJP, AltFW. The AID antibody diversification enzyme is regulated by protein kinase A phosphorylation. Nature2005; 438(7067): 508–511 doi: 10.1038/nature04255 pmid: 16251902
|
179 |
ChengHL, VuongBQ, BasuU, FranklinA, SchwerB, AstaritaJ, PhanRT, DattaA, ManisJ, AltFW, ChaudhuriJ. Integrity of the AID serine-38 phosphorylation site is critical for class switch recombination and somatic hypermutation in mice. Proc Natl Acad Sci USA2009; 106(8): 2717–2722 doi: 10.1073/pnas.0812304106 pmid: 19196992
|
180 |
HakimO, ReschW, YamaneA, KleinI, Kieffer-KwonKR, JankovicM, OliveiraT, BothmerA, VossTC, Ansarah-SobrinhoC, MatheE, LiangG, CobellJ, NakahashiH, RobbianiDF, NussenzweigA, HagerGL, NussenzweigMC, CasellasR. DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes. Nature2012; 484(7392): 69–74 pmid: 22314321
|
181 |
RochaPP, MicsinaiM, KimJR, HewittSL, SouzaPP, TrimarchiT, StrinoF, ParisiF, KlugerY, SkokJA. Close proximity to Igh is a contributing factor to AID-mediated translocations. Mol Cell2012; 47(6): 873–885 doi: 10.1016/j.molcel.2012.06.036 pmid: 22864115
|
182 |
ZhangY, McCordRP, HoYJ, LajoieBR, HildebrandDG, SimonAC, BeckerMS, AltFW, DekkerJ. Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. Cell2012; 148(5): 908–921 doi: 10.1016/j.cell.2012.02.002 pmid: 22341456
|
183 |
GramlichHS, ReisbigT, SchatzDG. AID-targeting and hypermutation of non-immunoglobulin genes does not correlate with proximity to immunoglobulin genes in germinal center B cells. PLoS ONE2012; 7(6): e39601 doi: 10.1371/journal.pone.0039601 pmid: 22768095
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