|
|
|
Flooding impact on the distribution of microbial tetraether lipids in paddy rice soil in China |
Asma AYARI, Huan YANG, Shucheng XIE( ) |
| State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China |
|
|
|
|
Abstract Isoprenoid and branched glycerol dialkyl glycerol tetraethers (GDGTs) lipids were studied in flooded and non-flooded paddy soil in Wuhan, central China, to examine the response of the GDGTs distribution to the soil flooding. Samples were collected before and after the soil flooding in four specific months. Both core (CL) and intact polar (IPL) GDGTs were quantified. Increase in the abundance of archaeol and caldarchaeol may be indicative of the occurrence of methanogens in the flooded soil. A negative correlation was observed between the ratio of IPL branched GDGT-IIa to GDGT-Ia and the soil pH. The rise of the soil pH in the acid soil is known to be controlled by the redox conditions resulting from flooding. Thus, the branched GDGTs distribution may be controlled by the water content in the paddy soil. In addition, we suggest that the anoxic conditions resulting from flooding may also control the abundance of branched GDGTs relative to crenarchaeol, which in turn results in the increase of branched and isoprenoidal tetraethers (BIT) values, the index for the terrestrial input to the marine sediments.
|
| Keywords
glycerol dialkyl glycerol tetraethers (GDGTs)
soil flooding
soil pH
redox conditions
GDGTs distribution
branched and isoprenoidal tetraethers (BIT)
|
|
Corresponding Author(s):
XIE Shucheng,Email:xiecug@163.com
|
|
Issue Date: 05 September 2013
|
|
| 1 |
Bligh E G, Dyer W J (1959). A rapid method of total lipid extraction and purification. Can J Biochem Physiol , 37(8): 911–917 doi: 10.1139/o59-099 pmid:13671378
|
| 2 |
Chen X P, Zhu Y G, Xia Y, Shen J P, He J Z (2008). Ammonia-oxidizing archaea: important players in paddy rhizosphere soil? Environ Microbiol , 10(8): 1978–1987 doi: 10.1111/j.1462-2920.2008.01613.x pmid:18430011
|
| 3 |
Chin K J, Rainey F A, Janssen P H, Conrad R (1998). Methanogenic degradation of polysaccharides and the characterization of polysaccharolytic clostridia from anoxic rice field soil. Syst Appl Microbiol , 21(2): 185–200 doi: 10.1016/S0723-2020(98)80023-4
|
| 4 |
Gro?kopf R R, Stubner S, LiesackW (1998). Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl Environ Microbiol , 64(12): 4983–4989 pmid:9835592
|
| 5 |
Harvey H R, Fallon R D, Patton J S (1986). The effect of organic matter and oxygen on the degradation of bacterial membrane lipids in marine sediments. Geochim Cosmochim Acta , 50(5): 795–804 doi: 10.1016/0016-7037(86)90355-8
|
| 6 |
Hopmans E C, Schouten S, Pancost R D, van der Meer M T J, Sinninghe Damsté J S (2000). Analysis of intact tetraether lipids in archaeal cell material and sediments by high performance liquid chromatography/atmospheric pressure chemical ionization mass spectrometry. Rapid Commun Mass Spectrom , 14(7): 585–589 doi: 10.1002/(SICI)1097-0231(20000415)14:7<585::AID-RCM913>3.0.CO;2-N pmid:10775092
|
| 7 |
Hopmans E C, Weijers J W H, Schefu? E, Herfort L, Sinninghe Damsté J S, Schouten S (2004). A novel proxy for terrestrial organic matter in sediments based on branched and isoprenoid tetraether lipids. Earth Planet Sci Lett , 224(1-2): 107–116 doi: 10.1016/j.epsl.2004.05.012
|
| 8 |
Huguet A, Fosse C, Laggoun-Défarge F, Toussaint M L, Derenne S (2010a). Occurrence and distribution of glycerol dialkyl glycerol tetraethers in a French peat bog. Org Geochem , 41(6): 559–572 doi: 10.1016/j.orggeochem.2010.02.015
|
| 9 |
Huguet A, Fosse C, Metzger P, Fritsch E, Derenne S (2010b). Occurrence and distribution of non-extractable glycerol dialkyl glycerol tetraethers in temperate and tropical podzol profiles. Org Geochem , 41(8): 833–844 doi: 10.1016/j.orggeochem.2010.04.020
|
| 10 |
Huguet A, Wiesenberg G L B, Gocke M, Fosse C, Derenne S (2012). Branched tetraether membrane lipids associated with rhizoliths in loess: Rhizomicrobial overprinting of initial biomarker record. Org Geochem , 43: 12–19 doi: 10.1016/j.orggeochem.2011.11.006
|
| 11 |
Huguet C, Hopmans E C, Febo-Ayala W, Thompson D H, Sinninghe Damsté J S, Schouten S (2006). An improved method to determine the absolute abundance of glycerol dibiphytanyl glycerol tetraether lipids. Org Geochem , 37(9): 1036–1041 doi: 10.1016/j.orggeochem.2006.05.008
|
| 12 |
Jones R T, Robeson M S, Lauber C L, Hamady M, Knight R, Fierer N (2009). A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J , 3(4): 442–453 doi: 10.1038/ismej.2008.127 pmid:19129864
|
| 13 |
Kates M, Kushner D J, Matheson A T (1993). The biochemistry of Archaea (Archaebacteria). Amsterdam: Elsevier Science Publishers
|
| 14 |
Kim J H, Van der Meer J, Schouten S, Helmke P, Willmott V, Sangiorgi F, Ko? N, Hopmans E C, Sinninghe Damsté J S (2010). New indices and calibrations derived from the distribution of crenarchaeal isoprenoid tetraether lipids: Implications for past sea surface temperature reconstructions. Geochim Cosmochim Acta , 74(16): 4639–4654 doi: 10.1016/j.gca.2010.05.027
|
| 15 |
Koga Y, Kyuragi T, Nishihara M, Sone N (1998a). Did archaeal and bacterial cells arise independently from noncellular precursors? A hypothesis stating that the advent of membrane phospholipid with enantiomeric glycerophosphate backbones caused the separation of the two lines of descent. J Mol Evol , 46(1): 54–63 doi: 10.1007/PL00006283 pmid:9419225
|
| 16 |
Koga Y, Morii H, Akagawa-Matsushita M, Ohga M (1998b). Correlation of polar lipid composition with 16S rRNA phylogeny in methanogens. Further analysis of lipid component parts. Biosci Biotechnol Biochem , 62(2): 230–236 doi: 10.1271/bbb.62.230
|
| 17 |
K?nneke M, Bernhard A E, de la Torre J R, Walker C B, Waterbury J B, Stahl D A (2005). Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature , 437(7058): 543–546 doi: 10.1038/nature03911 pmid:16177789
|
| 18 |
Liesack W, Schnell S, Revsbech N P (2000). Microbiology of flooded rice paddies. FEMS Microbiol Rev , 24(5): 625–645 doi: 10.1111/j.1574-6976.2000.tb00563.x pmid:11077155
|
| 19 |
Liu X L, Leider A, Gillespie A, Gr?ger J, Versteegh G J M, Hinrichs K U (2010). Identification of polar lipid precursors of the ubiquitous branched GDGT orphan lipids in a peat bog in Northern Germany. Org Geochem , 41(7): 653–660 doi: 10.1016/j.orggeochem.2010.04.004
|
| 20 |
Logemann J, Graue J, K?ster J, Engelen B, Rullk?tter J, Cypionka H (2011). A laboratory experiment of intact polar lipid degradation in sandy sediments. J Biosci , 8: 3289–3321
|
| 21 |
Loomis S E, Russell J M, Sinninghe Damsté J S (2011). Distributions of branched GDGTs in soils and lake sediments from western Uganda: Implications for a lacustrine paleothermometer. Org Geochem , 42(7): 739–751 doi: 10.1016/j.orggeochem.2011.06.004
|
| 22 |
Lu Y, Conrad R (2005). In situ stable isotope probing of methanogenic archaea in the rice rhizosphere. Science , 309(5737): 1088–1090 doi: 10.1126/science.1113435 pmid:16099988
|
| 23 |
Lu Y, Lueders T, Friedrich M W, Conrad R (2005). Detecting active methanogenic populations on rice roots using stable isotope probing. Environ Microbiol , 7(3): 326–336 doi: 10.1111/j.1462-2920.2005.00697.x pmid:15683393
|
| 24 |
Oba M, Sakata S, Tsunogai U (2006). Polar and neutral isopranyl glycerol ether lipids as biomarkers of archaea in near-surface sediments from the Nankai Trough. Org Geochem , 37(12): 1643–1654 doi: 10.1016/j.orggeochem.2006.09.002
|
| 25 |
Pancost R D, Hopmans E, Sinninghe Damsté J S (2001). Archaeal lipids in Mediterranean cold seeps: molecular proxies for anaerobic methane oxidation. Geochim Cosmochim Acta , 65(10): 1611–1627 doi: 10.1016/S0016-7037(00)00562-7
|
| 26 |
Pancost R D, Sinninghe Damsté J S (2003). Carbon isotopic compositions of prokaryotic lipids as tracers of carbon cycling in diverse settings. Chem Geol , 195(1-4): 29–58 doi: 10.1016/S0009-2541(02)00387-X
|
| 27 |
Peterse F, Prins M A, Beets C J, Troelstra S R, Zheng H, Gu Z, Schouten S, Sinninghe Damsté J S (2011). Decoupled warming and monsoon precipitation in East Asia over the last deglaciation. Earth Planet Sci Lett , 301(1-2): 256–264 doi: 10.1016/j.epsl.2010.11.010
|
| 28 |
Peterse F, van der Meer J, Schouten S, Weijers J W H, Fierer N, Jackson R B, Kim J H, Sinninghe Damsté J S (2012). Revised calibration of the MBT-CBT paleotemperature proxy based on branched tetraether membrane lipids in surface soils. Geochim Cosmochim Acta , 96: 215–229 doi: 10.1016/j.gca.2012.08.011
|
| 29 |
Pitcher A, Hopmans E C, Schouten S, Sinninghe Damsté J S (2009). Separation of core and intact polar archaeal tetraether lipids using silica columns: Insights into living and fossil biomass contributions. Org Geochem , 40(1): 12–19 doi: 10.1016/j.orggeochem.2008.09.008
|
| 30 |
Pitcher A, Wutcher C, Siddenberg K, Schouten S, Sinninghe Damsté J S (2011). Crenarchaeol tracks winter blooms of ammonia-oxidizing Thaumarchaeota in the coastal North Sea. Limnol Oceanogr , 56(6): 2308–2318 doi: 10.4319/lo.2011.56.6.2308
|
| 31 |
Ponnamperuma F N (1985). Chemical kinetics of wetland rice soils relative to soil fertility. In: Proceeding of wetland soils: characterization, classification and utilization. Philippines , International Rice Research Institute, 71–89
|
| 32 |
Revsbech N, Pedersen O, Reichardt W, Briones A (1999). Microsensor analysis of oxygen and pH in the rice rhizosphere under field and laboratory conditions. Biol Fertil Soils , 29(4): 379–385 doi: 10.1007/s003740050568
|
| 33 |
Schouten S, Hopmans E C, Schefu? E, Sinninghe Damsté J S (2002). Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures? Earth Planet Sci Lett , 204(1-2): 265–274 doi: 10.1016/S0012-821X(02)00979-2
|
| 34 |
Schouten S, Huguet C, Hopmans E C, Kienhuis M V M, Sinninghe Damsté J S (2007). Improved analytical methodology and constraints on analysis of the TEX86 paleothermometer by high performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometry. Anal Chem , 79(7): 2940–2944 doi: 10.1021/ac062339v pmid:17311408
|
| 35 |
Sinninghe Damsté J S, Schouten S, Hopmans E C, van Duin A C, Geenevasen J A (2002). Crenarchaeol the characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeota. J Lip Res , 43(10): 1641–1651 doi: 10.1194/jlr.M200148-JLR200
|
| 36 |
Sinninghe Damsté J S, Rijpstra W I C, Hopmans E C, Weijers J W H, Foesel B U, Overmann J, Dedysh S N (2011). 13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3. Appl Environ Microbiol , 77(12): 4147–4154 doi: 10.1128/AEM.00466-11 pmid:21515715
|
| 37 |
Sinninghe Damsté J S, Rijpstra W I C, Hopmans E C, Jung M Y, Kim J G, Rhee S K, Stieglmeier M, Schleper C (2012). Intact Polar and Core Glycerol Dibiphytanyl Glycerol Tetraether Lipids of Group I. 1a and I. 1b Thaumarchaeota in Soil. Appl Environ Microbiol , 78(19): 6866–6874 doi: 10.1128/AEM.01681-12
|
| 38 |
Sturt H F, Summons R E, Smith K, Elvert M, Hinrichs K U (2004). Intact polar membrane lipids in prokaryotes and sediments deciphered by high-performance liquid chromatography/electrospray ionization multistage mass spectrometry—new biomarkers for biogeochemistry and microbial ecology. Rapid Commun Mass Spectrom , 18(6): 617–628 doi: 10.1002/rcm.1378 pmid:15052572
|
| 39 |
Tierney J E, Russell J M (2009). Distributions of branched GDGTs in a tropical lake system: implications for lacustrine application of the MBT/CBT palaeoproxy. Org Geochem , 40(9): 1032–1036 doi: 10.1016/j.orggeochem.2009.04.014
|
| 40 |
Tierney J E, Russell J M, Eggermont H, Hopmans E C, Verschuren D, Sinninghe Damsté J S (2010). Environmental controls on branched tetraether lipid distributions in tropical East African lake sediments. Geochim Cosmochim Acta , 74(17): 4902–4918 doi: 10.1016/j.gca.2010.06.002
|
| 41 |
Tierney J E, Schouten S, Pitcher A, Hopmans E C, Sinninghe Damsté J S (2012). Core and intact polar glycerol dialkyl glycerol tetraethers (GDGTs) in Sand Pond, Warwick, Rhode Island (USA): insights into the origin of lacustrine GDGTs. Geochim Cosmochim Acta , 77: 561–581 doi: 10.1016/j.gca.2011.10.018
|
| 42 |
Weijers J W H, Panoto E, van Bleijswijk J, Schouten S, Rijpstra W I C, Balk M, Stams A J M, Sinninghe Damsté J S (2009). Constraints on the biological source (s) of the orphan branched tetraether membrane lipids. Geomicrobiol J , 26(6): 402–414 doi: 10.1080/01490450902937293
|
| 43 |
Weijers J W H, Schefuss E, Schouten S, Sinninghe Damsté J S (2007a). Coupled thermal and hydrological evolution of tropical Africa over the last deglaciation. Science , 315(5819): 1701–1704 doi: 10.1126/science.1138131 pmid:17379805
|
| 44 |
Weijers J W H, Schouten S, Hopmans E C, Geenevasen J A J, David O R P, Coleman J M, Pancost R D, Sinninghe Damsté J S (2006). Membrane lipids of mesophilic anaerobic bacteria thriving in peats have typical archaeal traits. Environ Microbiol , 8(4): 648–657 doi: 10.1111/j.1462-2920.2005.00941.x pmid:16584476
|
| 45 |
Weijers J W H, Schouten S, van den Donker J C, Hopmans E C, Sinninghe Damsté J S (2007b). Environmental controls on bacterial tetraether membrane lipid distribution in soils. Geochim Cosmochim Acta , 71(3): 703–713 doi: 10.1016/j.gca.2006.10.003
|
| 46 |
Weijers J W H, Wiesenberg G L B, Bol R, Hopmans E C, Pancost R D (2010). Carbon isotopic composition of branched tetraether membrane lipids in soils suggest a rapid turnover and a heterotrophic life style of their source organism (s). Biogeosciences , 7(9): 2959–2973 doi: 10.5194/bg-7-2959-2010
|
| 47 |
White D, Davis W, Nickels J, King J, Bobbie R (1979). Determination of the sedimentary microbial biomass by extractible lipid phosphate. Oecologia , 40(1): 51–62 doi: 10.1007/BF00388810
|
| 48 |
Yang H, Ding W, Wang J, Jin C, He G, Qin Y, Xie S (2012). Soil pH impact on microbial tetraether lipids and terrestrial input index (BIT) in China. Science China (Earth Sciences) , 55(2): 236–245 doi: 10.1007/s11430-011-4295-x
|
| 49 |
Yang H, Ding W, Zhang C L, Wu X, Ma X, He G, Huang J, Xie S (2011). Occurrence of tetraether lipids in stalagmites: Implications for sources and GDGT-based proxies. Org Geochem , 42(1): 108–115 doi: 10.1016/j.orggeochem.2010.11.006
|
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
| |
Shared |
|
|
|
|
| |
Discussed |
|
|
|
|