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Dephosphorylation of cGAS by PPP6C impairs its substrate binding activity and innate antiviral response |
Mi Li, Hong-Bing Shu( ) |
| Department of Infectious Diseases, Frontier Science Center for Immunology and Metabolism, Medical Research Institute, Zhongnan Hospital of Wuhan University, College of Life Sciences, Wuhan University, Wuhan 430071, China |
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Abstract The cyclic GMP-AMP (cGAMP) synthase (cGAS) plays a critical role in host defense by sensing cytosolic DNA derived from microbial pathogens or mis-located cellular DNA. Upon DNA binding, cGAS utilizes GTP and ATP as substrates to synthesize cGAMP, leading to MITA-mediated innate immune response. In this study, we identified the phosphatase PPP6C as a negative regulator of cGASmediated innate immune response. PPP6C is constitutively associated with cGAS in un-stimulated cells. DNA virus infection causes rapid disassociation of PPP6C from cGAS, resulting in phosphorylation of human cGAS S435 or mouse cGAS S420 in its catalytic pocket. Mutation of this serine residue of cGAS impairs its ability to synthesize cGAMP upon DNA virus infection. In vitro experiments indicate that S420-phosphorylated mcGAS has higher affinity to GTP and enzymatic activity. PPP6Cdeficiency promotes innate immune response to DNA virus in various cells. Our findings suggest that PPP6Cmediated dephosphorylation of a catalytic pocket serine residue of cGAS impairs its substrate binding activity and innate immune response, which provides a mechanism for keeping the DNA sensor cGAS inactive in the absence of infection to avoid autoimmune response.
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| Keywords
DNA virus
PPP6C
cGAS
innate immune response
phosphorylation
substrate binding
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Corresponding Author(s):
Hong-Bing Shu
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Issue Date: 26 August 2020
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|
| 1 |
S Akira, S Uematsu, O Takeuchi (2006) Pathogen recognition and innate immunity. Cell 124:783–801
https://doi.org/10.1016/j.cell.2006.02.015
|
| 2 |
J An, L Durcan, RM Karr, TA Briggs, GI Rice, TH Teal, JJ Woodward, KB Elkon (2017) Expression of cyclic GMP-AMP synthase in patients with systemic lupus erythematosus. Arthritis Rheumatol 69:800–807
https://doi.org/10.1002/art.40002
|
| 3 |
X Bonilla, L Parmentier, B King, F Bezrukov, G Kaya, V Zoete, VB Seplyarskiy, HJ Sharpe, T McKee, A Letourneauet al. (2016) Genomic analysis identifies new drivers and progression pathways in skin basal cell carcinoma. Nat Genet 48:398–406
https://doi.org/10.1038/ng.3525
|
| 4 |
DL Brautigan, S Shenolikar (2018) Protein serine/threonine phosphatases: keys to unlocking regulators and substrates. Annu Rev Biochem 87:921–964
https://doi.org/10.1146/annurev-biochem-062917-012332
|
| 5 |
J Dai, YJ Huang, X He, M Zhao, X Wang, ZS Liu, W Xue, H Cai, XY Zhan, SY Huanget al.(2019) Acetylation blocks cGAS activity and inhibits self-DNA-induced autoimmunity. Cell 176(1447–1460):e1414
https://doi.org/10.1016/j.cell.2019.01.016
|
| 6 |
C Fang, X Wei, Y Wei (2016) Mitochondrial DNA in the regulation of innate immune responses. Protein Cell 7:11–16
https://doi.org/10.1007/s13238-015-0222-9
|
| 7 |
P Gao, M Ascano, Y Wu, W Barchet, BL Gaffney, T Zillinger, AA Serganov, Y Liu, RA Jones, G Hartmannet al. (2013) Cyclic [G (2’,5’)pA(3’,5’)p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase. Cell 153:1094–1107
https://doi.org/10.1016/j.cell.2013.04.046
|
| 8 |
EE Gray, PM Treuting, JJ Woodward, DB Stetson (2015) Cutting edge: cGAS is required for lethal autoimmune disease in the Trex1-deficient mouse model of aicardi-goutieres syndrome.J Immunol 195:1939–1943
https://doi.org/10.4049/jimmunol.1500969
|
| 9 |
SM Harding, JL Benci, J Irianto, DE Discher, AJ Minn, RA Greenberg (2017) Mitotic progression following DNA damage enables pattern recognition within micronuclei. Nature 548:466–470
https://doi.org/10.1038/nature23470
|
| 10 |
T Hiratsuka (1975) 2’ (or 3’)-O-(2, 4, 6-trinitrophenyl)adenosine 5’-triphosphate as a probe for the binding site of heavy meromyosin ATPase. J Biochem 78:1135–1147
https://doi.org/10.1093/oxfordjournals.jbchem.a131009
|
| 11 |
E Hodis, IR Watson, GV Kryukov, ST Arold, M Imielinski, JP Theurillat, E Nickerson, D Auclair, L Li, C Placeet al. (2012) A landscape of driver mutations in melanoma. Cell 150:251–263
https://doi.org/10.1016/j.cell.2012.06.024
|
| 12 |
R Hooy, J Sohn (2019) A pyrophosphatase-coupled assay to monitor the NTase activity of cGAS. Methods Enzymol 625:77–86
https://doi.org/10.1016/bs.mie.2019.06.005
|
| 13 |
AS Hosing, NC Valerie, J Dziegielewski, DL Brautigan, JM Larner (2012) PP6 regulatory subunit R1 is bidentate anchor for targeting protein phosphatase-6 to DNA-dependent protein kinase. J Biol Chem 287:9230–9239
https://doi.org/10.1074/jbc.M111.333708
|
| 14 |
MM Hu, HB Shu (2018) Cytoplasmic Mechanisms of Recognition and Defense of Microbial Nucleic Acids. Annu Rev Cell Dev Biol 34:357–379
https://doi.org/10.1146/annurev-cellbio-100617-062903
|
| 15 |
MM Hu, HB Shu (2019) Innate immune response to cytoplasmic DNA: mechanisms and diseases. Annu Rev Immunol
https://doi.org/10.1146/annurev-immunol-070119-115052
|
| 16 |
MM Hu, Q Yang, XQ Xie, CY Liao, H Lin, TT Liu, L Yin, HB Shu (2016) Sumoylation promotes the stability of the DNA sensor cGAS and the adaptor STING to regulate the kinetics of response to DNA virus. Immunity 45:555–569
https://doi.org/10.1016/j.immuni.2016.08.014
|
| 17 |
MM Hu, WR He, P Gao, Q Yang, K He, LB Cao, S Li, YQ Feng, HB Shu (2019) Virus-induced accumulation of intracellular bile acids activates the TGR5-beta-arrestin-SRC axis to enable innate antiviral immunity. Cell Res 29:193–205
https://doi.org/10.1038/s41422-018-0136-1
|
| 18 |
H Ishikawa, GN Barber (2008) STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling. Nature 455:674–678
https://doi.org/10.1038/nature07317
|
| 19 |
CA Jr Janeway, R Medzhitov (2002) Innate immune recognition. Annu Rev Immunol 20:197–216
https://doi.org/10.1146/annurev.immunol.20.083001.084359
|
| 20 |
T Kajino, H Ren, S Iemura, T Natsume, B Stefansson, DL Brautigan, K Matsumoto, J Ninomiya-Tsuji (2006) Protein phosphatase 6 down-regulates TAK1 kinase activation in the IL-1 signaling pathway. J Biol Chem 281:39891–39896
https://doi.org/10.1074/jbc.M608155200
|
| 21 |
X Li, C Shu, G Yi, CT Chaton, CL Shelton, J Diao, X Zuo, CC Kao, AB Herr, P Li (2013) Cyclic GMP-AMP synthase is activated by double-stranded DNA-induced oligomerization. Immunity 39:1019–1031
https://doi.org/10.1016/j.immuni.2013.10.019
|
| 22 |
Y Liu, AA Jesus, B Marrero, D Yang, SE Ramsey, GAM Sanchez, K Tenbrock, H Wittkowski, OY Jones, HS Kuehnet al. (2014) Activated STING in a vascular and pulmonary syndrome. N Engl J Med 371:507–518
https://doi.org/10.1056/NEJMoa1312625
|
| 23 |
S Liu, X Cai, J Wu, Q Cong, X Chen, T Li, F Du, J Ren. YT Wu, NV Grishinet al. (2015) Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation. Science 347, aaa2630.
https://doi.org/10.1126/science.aaa2630
|
| 24 |
H Liu, H Zhang, X Wu, D Ma, J Wu, L Wang, Y Jiang, Y Fei, C Zhu, R Tanet al. (2018) Nuclear cGAS suppresses DNA repair and promotes tumorigenesis. Nature 563:131–136
https://doi.org/10.1038/s41586-018-0629-6
|
| 25 |
L Long, Y Deng, F Yao, D Guan, Y Feng, H Jiang, X Li, P Hu, X Lu, H Wanget al. (2014) Recruitment of phosphatase PP2A by RACK1 adaptor protein deactivates transcription factor IRF3 and limits type I interferon signaling. Immunity 40:515–529
https://doi.org/10.1016/j.immuni.2014.01.015
|
| 26 |
WW Luo, HB Shu (2018) Delicate regulation of the cGAS-MITAmediated innate immune response. Cell Mol Immunol 15:666–675
https://doi.org/10.1038/cmi.2016.51
|
| 27 |
KJ Mackenzie, P Carroll, CA Martin, O Murina, A Fluteau, DJ Simpson, N Olova, H Sutcliffe, JK Rainger, A Leitchet al. (2017) cGAS surveillance of micronuclei links genome instability to innate immunity. Nature 548:461–465
https://doi.org/10.1038/nature23449
|
| 28 |
H Ogoh, N Tanuma, Y Matsui, N Hayakawa, A Inagaki, M Sumiyoshi, Y Momoi, A Kishimoto, M Suzuki, N Sasakiet al. (2016) The protein phosphatase 6 catalytic subunit (Ppp6c) is indispensable for proper post-implantation embryogenesis. Mech Dev 139:1–9
https://doi.org/10.1016/j.mod.2016.02.001
|
| 29 |
NL Pirman, KW Barber, HR Aerni, NJ Ma, AD Haimovich, S Rogulina, FJ Isaacs, J Rinehart (2015) A flexible codon in genomically recoded Escherichia coli permits programmable protein phosphorylation. Nat Commun 6:8130
https://doi.org/10.1038/ncomms9130
|
| 30 |
J Shang. T Xia, QQ Han, X Zhao, MM Hu, HB Shu, L Guo (2018) Quantitative proteomics identified TTC4 as a TBK1 interactor and a positive regulator of SeV-induced innate immunity. Proteomics 18:1
https://doi.org/10.1002/pmic.201700403
|
| 31 |
L Sun, J Wu, F Du, X Chen, ZJ Chen (2013) Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway. Science 339:786–791
https://doi.org/10.1126/science.1232458
|
| 32 |
W Sun, Y Li, L Chen, H Chen, F You, X Zhou, Y Zhou, Z Zhai, D Chen, Z Jiang (2009) ERIS, an endoplasmic reticulum IFN stimulator,activates innate immune signaling through dimerization. ProcNatl Acad Sci USA 106:8653–8658
https://doi.org/10.1073/pnas.0900850106
|
| 33 |
AP West, W Khoury-Hanold, M Staron, MC Tal, CM Pineda, SM Lang, M Bestwick, BA Duguay, N Raimundo, DA MacDuffet al. (2015) Mitochondrial DNA stress primes the antiviral innate immune response. Nature 520:553–557
https://doi.org/10.1038/nature14156
|
| 34 |
E Wies, MK Wang, NP Maharaj, K Chen, S Zhou, RW Finberg, MU Gack (2013) Dephosphorylation of the RNA sensors RIG-I and MDA5 by the phosphatase PP1 is essential for innate immune signaling. Immunity 38:437–449
https://doi.org/10.1016/j.immuni.2012.11.018
|
| 35 |
FS Willard, AJ Kimple, CA Johnston, DP Siderovski (2005) A direct fluorescence-based assay for RGS domain GTPase accelerating activity. Anal Biochem 340:341–351
https://doi.org/10.1016/j.ab.2005.02.015
|
| 36 |
J Wu, L Sun, X Chen, F Du, H Shi, C Chen, ZJ Chen (2013) Cyclic GMP-AMP is an endogenous second messenger in innate immune signaling by cytosolic DNA. Science 339:826–830
https://doi.org/10.1126/science.1229963
|
| 37 |
P Xia, S Wang, P Gao, G Gao, Z Fan (2016) DNA sensor cGASmediated immune recognition. Protein Cell 7:777–791
https://doi.org/10.1007/s13238-016-0320-3
|
| 38 |
T Xia, XM Yi, X Wu, J Shang, HB Shu (2019) PTPN1/2-mediated dephosphorylation of MITA/STING promotes its 20S proteasomal degradation and attenuates innate antiviral response. Proc Natl Acad Sci USA 116:20063–20069
https://doi.org/10.1073/pnas.1906431116
|
| 39 |
M Xiong, S Wang, YY Wang, Y Ran (2018) The regulation of cGAS. Virol Sin 33:117–124
https://doi.org/10.1007/s12250-018-0005-6
|
| 40 |
BR Yan, L Zhou, MM Hu, M Li, H Lin, Y Yang, YY Wang, HB Shu (2017) PKACs attenuate innate antiviral response by phosphorylating VISA and priming it for MARCH5-mediated degradation. PLoS Pathog 13:e1006648
https://doi.org/10.1371/journal.ppat.1006648
|
| 41 |
Z Zhan, H Cao, X Xie, L Yang, P Zhang, Y Chen, H Fan, Z Liu, X Liu (2015) Phosphatase PP4 negatively regulates type I IFN production and antiviral innate immunity by dephosphorylating and deactivating TBK1. J Immunol 195:3849–3857
https://doi.org/10.4049/jimmunol.1403083
|
| 42 |
B Zhong, Y Yang, S Li, YY Wang, Y Li, F Diao, C Lei, X He, L Zhang, P Tienet al. (2008) The adaptor protein MITA links virus-sensing receptors to IRF3 transcription factor activation. Immunity 29:538–550
https://doi.org/10.1016/j.immuni.2008.09.003
|
| 43 |
J Zhong, J Liao, X Liu, P Wang, J Liu, W Hou, B Zhu, L Yao, J Wang, J Liet al. (2011) Protein phosphatase PP6 is required for homology-directed repair of DNA double-strand breaks. Cell Cycle 10:1411–1419
https://doi.org/10.4161/cc.10.9.15479
|
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