SCRaMbLE drive application of synthetic yeast genome
Jin Jin, Yuan Ma, Duo Liu()
Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
JCello, A V Paul, E Wimmer. Chemical synthesis of poliovirus cDNA: Generation of infectious virus in the absence of natural template. Science, 2002, 297(5583): 1016–1018 https://doi.org/10.1126/science.1072266
pmid: 12114528
2
D GGibson, J I Glass, C Lartigue, V NNoskov, R YChuang, M AAlgire, G ABenders, M GMontague, LMa, M M Moodie, et al. Creation of a bacterial cell controlled by a chemically synthesized genome. Science, 2010, 329(5987): 52–56 https://doi.org/10.1126/science.1190719
pmid: 20488990
3
C AIII Hutchison, R YChuang, V NNoskov, NAssad-Garcia, T JDeerinck, M HEllisman, JGill, K Kannan, B JKaras, LMa, et al. Design and synthesis of a minimal bacterial genome. Science, 2016, 351(6280): aad6253
4
NOstrov, M Landon, MGuell, GKuznetsov, JTeramoto, NCervantes, MZhou, K Singh, M GNapolitano, MMoosburner, et al. Design, synthesis, and testing toward a 57-codon genome. Science, 2016, 353(6301): 819–822 https://doi.org/10.1126/science.aaf3639
pmid: 27540174
5
NAnnaluru, H Muller, L AMitchell, SRamalingam, GStracquadanio, S MRichardson, J SDymond, ZKuang, L ZScheifele, E MCooper, et al. Total synthesis of a functional designer eukaryotic chromosome. Science, 2014, 344(6179): 55–58 https://doi.org/10.1126/science.1249252
pmid: 24674868
6
S MRichardson, L AMitchell, GStracquadanio, KYang, J S Dymond, J E DiCarlo, D Lee, C LHuang, SChandrasegaran, YCai, et al. Design of a synthetic yeast genome. Science, 2017, 355(6329): 1040–1044 https://doi.org/10.1126/science.aaf4557
pmid: 28280199
7
L AMitchell, A Wang, GStracquadanio, ZKuang, X YWang, KYang, S Richardson, J AMartin, YZhao, R Walker, et al. Synthesis, debugging, and effects of synthetic chromosome consolidation: SynVI and beyond. Science, 2017, 355(6329): eaaf4831
8
YShen, Y Wang, TChen, FGao, J H Gong, D Abramczyk, RWalker, H CZhao, S HChen, WLiu, et al. Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome. Science, 2017, 355(6329): eaaf4791
9
YWu, B Z Li, M Zhao, L AMitchell, Z XXie, Q HLin, XWang, W H Xiao, Y Wang, XZhou, et al. Bug mapping and fitness testing of chemically synthesized chromosome X. Science, 2017, 355 (6329): eaaf4706
10
Z XXie, B Z Li, L A Mitchell, Y Wu, XQi, ZJin, B Jia, XWang, B XZeng, H MLiu, et al.“Perfect” designer chromosome V and behavior of a ring derivative. Science, 2017, 355 (6329): eaaf4704 1046
11
W MZhang, G H Zhao, Z Q Luo, Y C Lin, L H Wang, Y K Guo, A Wang, S YJiang, Q WJiang, J HGong, et al. Engineering the ribosomal DNA in a megabase synthetic chromosome. Science, 2017, 355 (6329): eaaf3981
12
Z XXie, D Liu, B ZLi, MZhao, B X Zeng, Y Wu, YShen, TLin, P Yang, JDai, et al. Design and chemical synthesis of eukaryotic chromosomes. Chemical Society Reviews, 2017, 46(23): 7191–7207 https://doi.org/10.1039/C7CS00208D
pmid: 29094136
13
BJia, Y Wu, B ZLi, L AMitchell, HLiu, S Pan, JWang, H RZhang, NJia, B Li, et al. Precise control of SCRaMbLE in synthetic haploid and diploid yeast. Nature Communications, 1933, 2018(9): 1–13
pmid: 29789567
14
YWu, R Y Zhu, L A Mitchell, L Ma, RLiu, MZhao. In vitro DNA SCRaMbLE. Nature Communications, 1935, 2018(9): 1–9
pmid: 29789594
15
M JShen, Y Wu, KYang, Y XLi, HXu, H R Zhang, X Li, W HXiao, XZhou, L A Mitchell, et al. Heterozygous diploid and interspecies SCRaMbLEing. Nature Communications, 1934, 2018(9): 1–8
pmid: 29789590
16
R ERamy, N Magroun, NMessadecq, LGauthier, FBoussin, FDantzer. Rapid host strain improvement by in vivo rearrangement of a synthetic yeast chromosome. Nature Communications, 1932, 2018(9): 1–10
17
Z QLuo, L H Wang, Y Wang, W MZhang, Y KGuo, YShen, L H Jiang, Q Y Wu, C Zhang, Y ZCai, et al. Identifying and characterizing SCRaMbLEd synthetic yeast using ReSCuES. Nature Communications, 1930, 2018(9): 1–10
pmid: 29789541
18
WLiu, Z Q Luo, Y Wang, N TPham, LTuck, I Pérez-Pi, L YLiu, YShen, C French, MAuer, et al. Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods. Nature Communications, 1936, 2018(9): 1–12
pmid: 29789543
19
LHochrein, L A Mitchell, K Schulz, KMesserschmidt. Mueller-roeber B. L-SCRaMbLE as a tool for light-controlled Cre-mediated recombination in yeast. Nature Communications, 1931, 2018(9): 1–10
20
JWang, B Jia, Z XXie, Y JYuan. Improving prodeoxyviolacein production via Multiplex SCRaMbLE Iterative Cycles. Frontiers of Chemical Science and Engineering, 2018 (Online First), doi: 10.1007/s11705-018-1739-2
