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Frontiers of Medicine

ISSN 2095-0217

ISSN 2095-0225(Online)

CN 11-5983/R

邮发代号 80-967

2019 Impact Factor: 3.421

Frontiers of Medicine  2023, Vol. 17 Issue (3): 476-492   https://doi.org/10.1007/s11684-022-0966-6
  本期目录
5′-tiRNA-Gln inhibits hepatocellular carcinoma progression by repressing translation through the interaction with eukaryotic initiation factor 4A-I
Chengdong Wu, Dekai Liu, Lufei Zhang, Jingjie Wang, Yuan Ding, Zhongquan Sun, Weilin Wang()
Department of Hepatobiliary and Pancreatic Surgery, The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310009, China; Key Laboratory of Precision Diagnosis and Treatment for Hepatobiliary and Pancreatic Tumor of Zhejiang Province, Hangzhou 310009, China; Research Center of Diagnosis and Treatment Technology for Hepatocellular Carcinoma of Zhejiang Province, Hangzhou 310009, China; Clinical Medicine Innovation Center of Precision Diagnosis and Treatment for Hepatobiliary and Pancreatic Disease of Zhejiang University, Hangzhou 310009, China; Clinical Research Center of Hepatobiliary and Pancreatic Diseases of Zhejiang Province, Hangzhou 310009, China; Cancer Center, Zhejiang University, Hangzhou 310009, China
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Abstract

tRNA-derived small RNAs (tsRNAs) are novel non-coding RNAs that are involved in the occurrence and progression of diverse diseases. However, their exact presence and function in hepatocellular carcinoma (HCC) remain unclear. Here, differentially expressed tsRNAs in HCC were profiled. A novel tsRNA, tRNAGln-TTG derived 5′-tiRNA-Gln, is significantly downregulated, and its expression level is correlated with progression in patients. In HCC cells, 5′-tiRNA-Gln overexpression impaired the proliferation, migration, and invasion in vitro and in vivo, while 5′-tiRNA-Gln knockdown yielded opposite results. 5′-tiRNA-Gln exerted its function by binding eukaryotic initiation factor 4A-I (EIF4A1), which unwinds complex RNA secondary structures during translation initiation, causing the partial inhibition of translation. The suppressed downregulated proteins include ARAF, MEK1/2 and STAT3, causing the impaired signaling pathway related to HCC progression. Furthermore, based on the construction of a mutant 5′-tiRNA-Gln, the sequence of forming intramolecular G-quadruplex structure is crucial for 5′-tiRNA-Gln to strongly bind EIF4A1 and repress translation. Clinically, 5′-tiRNA-Gln expression level is negatively correlated with ARAF, MEK1/2, and STAT3 in HCC tissues. Collectively, these findings reveal that 5′-tiRNA-Gln interacts with EIF4A1 to reduce related mRNA binding through the intramolecular G-quadruplex structure, and this process partially inhibits translation and HCC progression.

Key wordsEIF4A1    G-quadruplex    hepatocellular carcinoma    tRNA-derived small RNA    translation initiation
收稿日期: 2022-06-27      出版日期: 2023-07-28
Corresponding Author(s): Weilin Wang   
 引用本文:   
. [J]. Frontiers of Medicine, 2023, 17(3): 476-492.
Chengdong Wu, Dekai Liu, Lufei Zhang, Jingjie Wang, Yuan Ding, Zhongquan Sun, Weilin Wang. 5′-tiRNA-Gln inhibits hepatocellular carcinoma progression by repressing translation through the interaction with eukaryotic initiation factor 4A-I. Front. Med., 2023, 17(3): 476-492.
 链接本文:  
https://academic.hep.com.cn/fmd/CN/10.1007/s11684-022-0966-6
https://academic.hep.com.cn/fmd/CN/Y2023/V17/I3/476
Characteristics Mean ± SD or n (%)
Gender
Male 67 (88.2%)
Female 9 (12.8%)
Age (year) 57.79 ± 11.7
HBV infection
Present 54 (71.1%)
Absent 22 (28.9%)
AFP (ng/mL)
≥ 400 20 (26.3%)
< 400 56 (73.7%)
Liver cirrhosis
Present 58 (76.3%)
Absent 18 (23.7%)
Tumor number
Multi 9 (11.8%)
Single 67 (88.2%)
Tumor size (cm) 7.03 ± 3.57
≥ 5 53 (69.7%)
< 5 23 (30.3%)
Metastasis
Present 42 (55.3%)
Absent 34 (44.7%)
Differentiation
High 47 (61.8%)
Low 29 (38.2%)
Tab.1  
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1 M Zhou, H Wang, X Zeng, P Yin, J Zhu, W Chen, X Li, L Wang, L Wang, Y Liu, J Liu, M Zhang, J Qi, S Yu, A Afshin, E Gakidou, S Glenn, VS Krish, MK Miller-Petrie, WC Mountjoy-Venning, EC Mullany, SB Redford, H Liu, M Naghavi, SI Hay, L Wang, CJL Murray, X Liang. Mortality, morbidity, and risk factors in China and its provinces, 1990–2017: a systematic analysis for the Global Burden of Disease Study 2017. Lancet 2019; 394(10204): 1145–1158
https://doi.org/10.1016/S0140-6736(19)30427-1 pmid: 31248666
2 H Sung, J Ferlay, RL Siegel, M Laversanne, I Soerjomataram, A Jemal, F Bray. Global Cancer Statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin 2021; 71(3): 209–249
https://doi.org/10.3322/caac.21660 pmid: 33538338
3 JD Yang, P Hainaut, GJ Gores, A Amadou, A Plymoth, LR Roberts. A global view of hepatocellular carcinoma: trends, risk, prevention and management. Nat Rev Gastroenterol Hepatol 2019; 16(10): 589–604
https://doi.org/10.1038/s41575-019-0186-y pmid: 31439937
4 T Kobayashi, H Aikata, T Kobayashi, H Ohdan, K Arihiro, K Chayama. Patients with early recurrence of hepatocellular carcinoma have poor prognosis. Hepatobiliary Pancreat Dis Int 2017; 16(3): 279–288
https://doi.org/10.1016/S1499-3872(16)60181-9 pmid: 28603096
5 J Wang, S Zhu, N Meng, Y He, R Lu, GR Yan. ncRNA-encoded peptides or proteins and cancer. Mol Ther 2019; 27(10): 1718–1725
https://doi.org/10.1016/j.ymthe.2019.09.001 pmid: 31526596
6 CM Wong, FHC Tsang, IOL Ng. Non-coding RNAs in hepatocellular carcinoma: molecular functions and pathological implications. Nat Rev Gastroenterol Hepatol 2018; 15(3): 137–151
https://doi.org/10.1038/nrgastro.2017.169 pmid: 29317776
7 M Klingenberg, A Matsuda, S Diederichs, T Patel. Non-coding RNA in hepatocellular carcinoma: mechanisms, biomarkers and therapeutic targets. J Hepatol 2017; 67(3): 603–618
https://doi.org/10.1016/j.jhep.2017.04.009 pmid: 28438689
8 Z Su, B Wilson, P Kumar, A Dutta. Noncanonical roles of tRNAs: tRNA fragments and beyond. Annu Rev Genet 2020; 54(1): 47–69
https://doi.org/10.1146/annurev-genet-022620-101840 pmid: 32841070
9 HK Kim, JH Yeom, MA Kay. Transfer RNA-derived small RNAs: another layer of gene regulation and novel targets for disease therapeutics. Mol Ther 2020; 28(11): 2340–2357
https://doi.org/10.1016/j.ymthe.2020.09.013 pmid: 32956625
10 P Ivanov, MM Emara, J Villen, SP Gygi, P Anderson. Angiogenin-induced tRNA fragments inhibit translation initiation. Mol Cell 2011; 43(4): 613–623
https://doi.org/10.1016/j.molcel.2011.06.022 pmid: 21855800
11 S Yamasaki, P Ivanov, GF Hu, P Anderson. Angiogenin cleaves tRNA and promotes stress-induced translational repression. J Cell Biol 2009; 185(1): 35–42
https://doi.org/10.1083/jcb.200811106 pmid: 19332886
12 S Li, GF Hu. Emerging role of angiogenin in stress response and cell survival under adverse conditions. J Cell Physiol 2012; 227(7): 2822–2826
https://doi.org/10.1002/jcp.23051 pmid: 22021078
13 YS Lee, Y Shibata, A Malhotra, A Dutta. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev 2009; 23(22): 2639–2649
https://doi.org/10.1101/gad.1837609 pmid: 19933153
14 H Goodarzi, X Liu, HC Nguyen, S Zhang, L Fish, SF Tavazoie. Endogenous tRNA-derived fragments suppress breast cancer progression via YBX1 displacement. Cell 2015; 161(4): 790–802
https://doi.org/10.1016/j.cell.2015.02.053 pmid: 25957686
15 LL Zheng, WL Xu, S Liu, WJ Sun, JH Li, J Wu, JH Yang, LH Qu. tRF2Cancer: a web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers. Nucleic Acids Res 2016; 44(W1): W185–93
https://doi.org/10.1093/nar/gkw414 pmid: 27179031
16 T Zeng, Y Hua, C Sun, Y Zhang, F Yang, M Yang, Y Yang, J Li, X Huang, H Wu, Z Fu, W Li, Y Yin. Relationship between tRNA-derived fragments and human cancers. Int J Cancer 2020; 147(11): 3007–3018
https://doi.org/10.1002/ijc.33107 pmid: 32427348
17 L Zhu, J Ge, T Li, Y Shen, J Guo. tRNA-derived fragments and tRNA halves: the new players in cancers. Cancer Lett 2019; 452: 31–37
https://doi.org/10.1016/j.canlet.2019.03.012 pmid: 30905816
18 R Magee, I Rigoutsos. On the expanding roles of tRNA fragments in modulating cell behavior. Nucleic Acids Res 2020; 48(17): 9433–9448
https://doi.org/10.1093/nar/gkaa657 pmid: 32890397
19 Q Chen, X Zhang, J Shi, M Yan, T Zhou. Origins and evolving functionalities of tRNA-derived small RNAs. Trends Biochem Sci 2021; 46(10): 790–804
https://doi.org/10.1016/j.tibs.2021.05.001 pmid: 34053843
20 MM Emara, P Ivanov, T Hickman, N Dawra, S Tisdale, N Kedersha, GF Hu, P Anderson. Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly. J Biol Chem 2010; 285(14): 10959–10968
https://doi.org/10.1074/jbc.M109.077560 pmid: 20129916
21 SM Lyons, C Achorn, NL Kedersha, PJ Anderson, P Ivanov. YB-1 regulates tiRNA-induced stress granule formation but not translational repression. Nucleic Acids Res 2016; 44(14): 6949–6960
https://doi.org/10.1093/nar/gkw418 pmid: 27174937
22 HK Kim, G Fuchs, S Wang, W Wei, Y Zhang, H Park, B Roy-Chaudhuri, P Li, J Xu, K Chu, F Zhang, MS Chua, S So, QC Zhang, P Sarnow, MA Kay. A transfer-RNA-derived small RNA regulates ribosome biogenesis. Nature 2017; 552(7683): 57–62
https://doi.org/10.1038/nature25005 pmid: 29186115
23 R Geslain, T Pan. Functional analysis of human tRNA isodecoders. J Mol Biol 2010; 396(3): 821–831
https://doi.org/10.1016/j.jmb.2009.12.018 pmid: 20026070
24 JM Goodenbour, T Pan. Diversity of tRNA genes in eukaryotes. Nucleic Acids Res 2006; 34(21): 6137–6146
https://doi.org/10.1093/nar/gkl725 pmid: 17088292
25 P Kumar, SB Mudunuri, J Anaya, A Dutta. tRFdb: a database for transfer RNA fragments. Nucleic Acids Res 2015; 43(D1): D141–D145
https://doi.org/10.1093/nar/gku1138 pmid: 25392422
26 V Pliatsika, P Loher, R Magee, AG Telonis, E Londin, M Shigematsu, Y Kirino, I Rigoutsos. MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects. Nucleic Acids Res 2018; 46(D1): D152–D159
https://doi.org/10.1093/nar/gkx1075 pmid: 29186503
27 AG Hinnebusch. The scanning mechanism of eukaryotic translation initiation. Annu Rev Biochem 2014; 83(1): 779–812
https://doi.org/10.1146/annurev-biochem-060713-035802 pmid: 24499181
28 RJ Jackson, CUT Hellen, TV Pestova. The mechanism of eukaryotic translation initiation and principles of its regulation. Nat Rev Mol Cell Biol 2010; 11(2): 113–127
https://doi.org/10.1038/nrm2838 pmid: 20094052
29 AL Wolfe, K Singh, Y Zhong, P Drewe, VK Rajasekhar, VR Sanghvi, KJ Mavrakis, M Jiang, JE Roderick, der Meulen J Van, JH Schatz, CM Rodrigo, C Zhao, P Rondou, Stanchina E de, J Teruya-Feldstein, MA Kelliher, F Speleman, JA Jr Porco, J Pelletier, G Rätsch, HG Wendel. RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer. Nature 2014; 513(7516): 65–70
https://doi.org/10.1038/nature13485 pmid: 25079319
30 A Modelska, E Turro, R Russell, J Beaton, T Sbarrato, K Spriggs, J Miller, S Gräf, E Provenzano, F Blows, P Pharoah, C Caldas, Quesne J Le. The malignant phenotype in breast cancer is driven by eIF4A1-mediated changes in the translational landscape. Cell Death Dis 2015; 6(1): e1603
https://doi.org/10.1038/cddis.2014.542 pmid: 25611378
31 K Singh, J Lin, N Lecomte, P Mohan, A Gokce, VR Sanghvi, M Jiang, O Grbovic-Huezo, A Burčul, SG Stark, PB Romesser, Q Chang, JP Melchor, RK Beyer, M Duggan, Y Fukase, G Yang, O Ouerfelli, A Viale, Stanchina E de, AW Stamford, PT Meinke, G Rätsch, SD Leach, Z Ouyang, HG Wendel. Targeting eIF4A-dependent translation of KRAS signaling molecules. Cancer Res 2021; 81(8): 2002–2014
https://doi.org/10.1158/0008-5472.CAN-20-2929 pmid: 33632898
32 S Iwasaki, W Iwasaki, M Takahashi, A Sakamoto, C Watanabe, Y Shichino, SN Floor, K Fujiwara, M Mito, K Dodo, M Sodeoka, H Imataka, T Honma, K Fukuzawa, T Ito, NT Ingolia. The translation inhibitor rocaglamide targets a bimolecular cavity between eIF4A and polypurine RNA. Mol Cell 2019; 73(4): 738–748.e9
https://doi.org/10.1016/j.molcel.2018.11.026 pmid: 30595437
33 O Kikin, L D’Antonio, PS Bagga. QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences. Nucleic Acids Res 2006; 34(suppl_2): W676–W682
https://doi.org/10.1093/nar/gkl253 pmid: 16845096
34 DF Calvisi, S Ladu, A Gorden, M Farina, EA Conner, JS Lee, VM Factor, SS Thorgeirsson. Ubiquitous activation of Ras and Jak/Stat pathways in human HCC. Gastroenterology 2006; 130(4): 1117–1128
https://doi.org/10.1053/j.gastro.2006.01.006 pmid: 16618406
35 B Delire, P Stärkel. The Ras/MAPK pathway and hepatocarcinoma: pathogenesis and therapeutic implications. Eur J Clin Invest 2015; 45(6): 609–623
https://doi.org/10.1111/eci.12441 pmid: 25832714
36 M Ranjpour, S Wajid, SK Jain. Elevated expression of A-Raf and FA2H in hepatocellular carcinoma is associated with lipid metabolism dysregulation and cancer progression. Anticancer Agents Med Chem 2019; 19(2): 236–247
https://doi.org/10.2174/1871520618666181015142810 pmid: 30324893
37 M Yu, B Lu, J Zhang, J Ding, P Liu, Y Lu. tRNA-derived RNA fragments in cancer: current status and future perspectives. J Hematol Oncol 2020; 13(1): 121
https://doi.org/10.1186/s13045-020-00955-6 pmid: 32887641
38 L Han, H Lai, Y Yang, J Hu, Z Li, B Ma, W Xu, W Liu, W Wei, D Li, Y Wang, Q Zhai, Q Ji, T Liao. A 5′-tRNA halve, tiRNA-Gly promotes cell proliferation and migration via binding to RBM17 and inducing alternative splicing in papillary thyroid cancer. J Exp Clin Cancer Res 2021; 40(1): 222
https://doi.org/10.1186/s13046-021-02024-3 pmid: 34225773
39 M Saikia, R Jobava, M Parisien, A Putnam, D Krokowski, XH Gao, BJ Guan, Y Yuan, E Jankowsky, Z Feng, GF Hu, M Pusztai-Carey, M Gorla, NB Sepuri, T Pan, M Hatzoglou. Angiogenin-cleaved tRNA halves interact with cytochrome c, protecting cells from apoptosis during osmotic stress. Mol Cell Biol 2014; 34(13): 2450–2463
https://doi.org/10.1128/MCB.00136-14 pmid: 24752898
40 P Kumar, J Anaya, SB Mudunuri, A Dutta. Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets. BMC Biol 2014; 12(1): 78
https://doi.org/10.1186/s12915-014-0078-0 pmid: 25270025
41 P Kumar, C Kuscu, A Dutta. Biogenesis and function of transfer RNA-related fragments (tRFs). Trends Biochem Sci 2016; 41(8): 679–689
https://doi.org/10.1016/j.tibs.2016.05.004 pmid: 27263052
42 L Guan, S Karaiskos, A Grigoriev. Inferring targeting modes of Argonaute-loaded tRNA fragments. RNA Biol 2020; 17(8): 1070–1080
https://doi.org/10.1080/15476286.2019.1676633 pmid: 31613177
43 T Venkatesh, PS Suresh, R Tsutsumi. tRFs: miRNAs in disguise. Gene 2016; 579(2): 133–138
https://doi.org/10.1016/j.gene.2015.12.058 pmid: 26743126
44 SM Lyons, P Kharel, Y Akiyama, S Ojha, D Dave, V Tsvetkov, W Merrick, P Ivanov, P Anderson. eIF4G has intrinsic G-quadruplex binding activity that is required for tiRNA function. Nucleic Acids Res 2020; 48(11): 6223–6233
https://doi.org/10.1093/nar/gkaa336 pmid: 32374873
45 P Ivanov, E O’Day, MM Emara, G Wagner, J Lieberman, P Anderson. G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments. Proc Natl Acad Sci USA 2014; 111(51): 18201–18206
https://doi.org/10.1073/pnas.1407361111 pmid: 25404306
46 SM Lyons, D Gudanis, SM Coyne, Z Gdaniec, P Ivanov. Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs. Nat Commun 2017; 8(1): 1127
https://doi.org/10.1038/s41467-017-01278-w pmid: 29066746
47 TM Nguyen, EB Kabotyanski, Y Dou, LC Reineke, P Zhang, XHF Zhang, A Malovannaya, SY Jung, Q Mo, KP Roarty, Y Chen, B Zhang, JR Neilson, RE Lloyd, CM Perou, MJ Ellis, JM Rosen. FGFR1-activated translation of WNT pathway components with structured 5′ UTRs is vulnerable to inhibition of EIF4A-dependent translation initiation. Cancer Res 2018; 78(15): 4229–4240
https://doi.org/10.1158/0008-5472.CAN-18-0631 pmid: 29844125
48 F Raza, JA Waldron, JL Quesne. Translational dysregulation in cancer: eIF4A isoforms and sequence determinants of eIF4A dependence. Biochem Soc Trans 2015; 43(6): 1227–1233
https://doi.org/10.1042/BST20150163 pmid: 26614665
49 G Biffi, M Di Antonio, D Tannahill, S Balasubramanian. Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells. Nat Chem 2014; 6(1): 75–80
https://doi.org/10.1038/nchem.1805 pmid: 24345950
50 CK Kwok, CJ Merrick. G-Quadruplexes: prediction, characterization, and biological application. Trends Biotechnol 2017; 35(10): 997–1013
https://doi.org/10.1016/j.tibtech.2017.06.012 pmid: 28755976
51 S Zhan, P Yang, S Zhou, Y Xu, R Xu, G Liang, C Zhang, X Chen, L Yang, F Jin, Y Wang. Serum mitochondrial tsRNA serves as a novel biomarker for hepatocarcinoma diagnosis. Front Med 2022; 16(2): 216–226
https://doi.org/10.1007/s11684-022-0920-7 pmid: 35416630
52 L Zhu, J Li, Y Gong, Q Wu, S Tan, D Sun, X Xu, Y Zuo, Y Zhao, YQ Wei, XW Wei, Y Peng. Exosomal tRNA-derived small RNA as a promising biomarker for cancer diagnosis. Mol Cancer 2019; 18(1): 74
https://doi.org/10.1186/s12943-019-1000-8 pmid: 30940133
53 D Mo, P Jiang, Y Yang, X Mao, X Tan, X Tang, D Wei, B Li, X Wang, L Tang, F Yan. A tRNA fragment, 5′-tiRNAVal, suppresses the Wnt/β-catenin signaling pathway by targeting FZD3 in breast cancer. Cancer Lett 2019; 457: 60–73
https://doi.org/10.1016/j.canlet.2019.05.007 pmid: 31078732
54 Y Wu, X Yang, G Jiang, H Zhang, L Ge, F Chen, J Li, H Liu, H Wang. 5′-tRF-GlyGCC: a tRNA-derived small RNA as a novel biomarker for colorectal cancer diagnosis. Genome Med 2021; 13(1): 20
https://doi.org/10.1186/s13073-021-00833-x pmid: 33563322
55 M Yu, B Lu, J Zhang, J Ding, P Liu, Y Lu. tRNA-derived RNA fragments in cancer: current status and future perspectives. J Hematol Oncol 2020; 13(1): 121
https://doi.org/10.1186/s13045-020-00955-6 pmid: 32887641
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