1. Department of Neurology, The First Affiliated Hospital of Soochow University, Suzhou 215006, China 2. Institute of Neuroscience, Soochow University, Suzhou 215006, China 3. Jiangsu Key Laboratory of Neuropsychiatric Diseases, Soochow University, Suzhou 215123, China
Brain development requires a delicate balance between self-renewal and differentiation in neural stem cells (NSC), which rely on the precise regulation of gene expression. Ten-eleven translocation 2 (TET2) modulates gene expression by the hydroxymethylation of 5-methylcytosine in DNA as an important epigenetic factor and participates in the neuronal differentiation. Yet, the regulation of TET2 in the process of neuronal differentiation remains unknown. Here, the protein level of TET2 was reduced by the ubiquitin-proteasome pathway during NSC differentiation, in contrast to mRNA level. We identified that TET2 physically interacts with the core subunits of the glucose-induced degradation-deficient (GID) ubiquitin ligase complex, an evolutionarily conserved ubiquitin ligase complex and is ubiquitinated by itself. The protein levels of GID complex subunits increased reciprocally with TET2 level upon NSC differentiation. The silencing of the core subunits of the GID complex, including WDR26 and ARMC8, attenuated the ubiquitination and degradation of TET2, increased the global 5-hydroxymethylcytosine levels, and promoted the differentiation of the NSC. TET2 level increased in the brain of the Wdr26+/− mice. Our results illustrated that the GID complex negatively regulates TET2 protein stability, further modulates NSC differentiation, and represents a novel regulatory mechanism involved in brain development.
S Ito, L Shen, Q Dai, SC Wu, LB Collins, JA Swenberg, C He, Y Zhang. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 2011; 333(6047): 1300–1303 https://doi.org/10.1126/science.1210597
2
YF He, BZ Li, Z Li, P Liu, Y Wang, Q Tang, J Ding, Y Jia, Z Chen, L Li, Y Sun, X Li, Q Dai, CX Song, K Zhang, C He, GL Xu. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 2011; 333(6047): 1303–1307 https://doi.org/10.1126/science.1210944
3
X Wu, Y Zhang. TET-mediated active DNA demethylation: mechanism, function and beyond. Nat Rev Genet 2017; 18(9): 517–534 https://doi.org/10.1038/nrg.2017.33
4
KP Koh, A Yabuuchi, S Rao, Y Huang, K Cunniff, J Nardone, A Laiho, M Tahiliani, CA Sommer, G Mostoslavsky, R Lahesmaa, SH Orkin, SJ Rodig, GQ Daley, A Rao. Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells. Cell Stem Cell 2011; 8(2): 200–213 https://doi.org/10.1016/j.stem.2011.01.008
5
MM Dawlaty, K Ganz, BE Powell, YC Hu, S Markoulaki, AW Cheng, Q Gao, J Kim, SW Choi, DC Page, R Jaenisch. Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development. Cell Stem Cell 2011; 9(2): 166–175 https://doi.org/10.1016/j.stem.2011.07.010
6
T Li, D Yang, J Li, Y Tang, J Yang, W Le. Critical role of Tet3 in neural progenitor cell maintenance and terminal differentiation. Mol Neurobiol 2015; 51(1): 142–154 https://doi.org/10.1007/s12035-014-8734-5
7
X Li, B Yao, L Chen, Y Kang, Y Li, Y Cheng, L Li, L Lin, Z Wang, M Wang, F Pan, Q Dai, W Zhang, H Wu, Q Shu, Z Qin, C He, M Xu, P Jin. Ten-eleven translocation 2 interacts with forkhead box O3 and regulates adult neurogenesis. Nat Commun 2017; 8: 15903 https://doi.org/10.1038/ncomms15903
8
Q Zhang, Q Hu, J Wang, Z Miao, Z Li, Y Zhao, B Wan, EG Allen, M Sun, P Jin, X Xu. Stress modulates Ahi1-dependent nuclear localization of ten-eleven translocation protein 2. Hum Mol Genet 2021; 30(22): 2149–2160 https://doi.org/10.1093/hmg/ddab179
9
L Li, M Miao, J Chen, Z Liu, W Li, Y Qiu, S Xu, Q Wang. Role of Ten eleven translocation-2 (Tet2) in modulating neuronal morphology and cognition in a mouse model of Alzheimer’s disease. J Neurochem 2021; 157(4): 993–1012 https://doi.org/10.1111/jnc.15234
10
Y Mi, X Gao, J Dai, Y Ma, L Xu, W Jin. A Novel function of TET2 in CNS: sustaining neuronal survival. Int J Mol Sci 2015; 16(9): 21846–21857 https://doi.org/10.3390/ijms160921846
J Cheng, S Guo, S Chen, SJ Mastriano, C Liu, AC D’Alessio, E Hysolli, Y Guo, H Yao, CM Megyola, D Li, J Liu, W Pan, CA Roden, XL Zhou, K Heydari, J Chen, IH Park, Y Ding, Y Zhang, J Lu. An extensive network of TET2-targeting microRNAs regulates malignant hematopoiesis. Cell Rep 2013; 5(2): 471–481 https://doi.org/10.1016/j.celrep.2013.08.050
13
D Wu, D Hu, H Chen, G Shi, IS Fetahu, F Wu, K Rabidou, R Fang, L Tan, S Xu, H Liu, C Argueta, L Zhang, F Mao, G Yan, J Chen, Z Dong, R Lv, Y Xu, M Wang, Y Ye, S Zhang, D Duquette, S Geng, C Yin, CG Lian, GF Murphy, GK Adler, R Garg, L Lynch, P Yang, Y Li, F Lan, J Fan, Y Shi, YG Shi. Glucose-regulated phosphorylation of TET2 by AMPK reveals a pathway linking diabetes to cancer. Nature 2018; 559(7715): 637–641 https://doi.org/10.1038/s41586-018-0350-5
14
M Ko, J An, HS Bandukwala, L Chavez, T Aijö, WA Pastor, MF Segal, H Li, KP Koh, H Lähdesmäki, PG Hogan, L Aravind, A Rao. Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX. Nature 2013; 497(7447): 122–126 https://doi.org/10.1038/nature12052
15
L Lv, Q Wang, Y Xu, LC Tsao, T Nakagawa, H Guo, L Su, Y Xiong. Vpr targets TET2 for degradation by CRL4VprBP E3 ligase to sustain IL-6 expression and enhance HIV-1 replication. Mol Cell 2018; 70(5): 961–970.e5 https://doi.org/10.1016/j.molcel.2018.05.007
16
O Santt, T Pfirrmann, B Braun, J Juretschke, P Kimmig, H Scheel, K Hofmann, M Thumm, DH Wolf. The yeast GID complex, a novel ubiquitin ligase (E3) involved in the regulation of carbohydrate metabolism. Mol Biol Cell 2008; 19(8): 3323–3333 https://doi.org/10.1091/mbc.e08-03-0328
17
F Lampert, D Stafa, A Goga, MV Soste, S Gilberto, N Olieric, P Picotti, M Stoffel, M Peter. The multi-subunit GID/CTLH E3 ubiquitin ligase promotes cell proliferation and targets the transcription factor Hbp1 for degradation. eLife 2018; 7: e35528 https://doi.org/10.7554/eLife.35528
18
CM Skraban, CF Wells, P Markose, MT Cho, AI Nesbitt, PYB Au, A Begtrup, JA Bernat, LM Bird, K Cao, Brouwer APM de, EH Denenberg, G Douglas, KM Gibson, K Grand, A Goldenberg, AM Innes, J Juusola, M Kempers, E Kinning, DM Markie, MM Owens, K Payne, R Person, R Pfundt, A Stocco, CLS Turner, NE Verbeek, LE Walsh, TC Warner, PG Wheeler, D Wieczorek, AB Wilkens, E; Deciphering Developmental Disorders Study; Kleefstra T Zonneveld-Huijssoon, SP Robertson, A Santani, Gassen KLI van, MA Deardorff. WDR26 haploinsufficiency causes a recognizable syndrome of intellectual disability, seizures, abnormal gait, and distinctive facial features. Am J Hum Genet 2017; 101(1): 139–148 https://doi.org/10.1016/j.ajhg.2017.06.002
19
A Córdova-Palomera, M Fatjó-Vilas, C Gastó, V Navarro, MO Krebs, L Fañanás. Genome-wide methylation study on depression: differential methylation and variable methylation in monozygotic twins. Transl Psychiatry 2015; 5(4): e557 https://doi.org/10.1038/tp.2015.49
20
C Tangsuwansri, T Saeliw, S Thongkorn, W Chonchaiya, K Suphapeetiporn, A Mutirangura, T Tencomnao, VW Hu, T Sarachana. Investigation of epigenetic regulatory networks associated with autism spectrum disorder (ASD) by integrated global LINE-1 methylation and gene expression profiling analyses. PLoS One 2018; 13(7): e0201071 https://doi.org/10.1371/journal.pone.0201071
21
C Dong, H Zhang, L Li, W Tempel, P Loppnau, J Min. Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway. Nat Chem Biol 2018; 14(5): 466–473 https://doi.org/10.1038/s41589-018-0036-1
22
YW Zhang, Z Wang, W Xie, Y Cai, L Xia, H Easwaran, J Luo, RC Yen, Y Li, SB Baylin. Acetylation enhances TET2 function in protecting against abnormal DNA methylation during oxidative stress. Mol Cell 2017; 65(2): 323–335 https://doi.org/10.1016/j.molcel.2016.12.013
23
D Guallar, X Bi, JA Pardavila, X Huang, C Saenz, X Shi, H Zhou, F Faiola, J Ding, P Haruehanroengra, F Yang, D Li, C Sanchez-Priego, A Saunders, F Pan, VJ Valdes, K Kelley, MG Blanco, L Chen, H Wang, J Sheng, M Xu, M Fidalgo, X Shen, J Wang. RNA-dependent chromatin targeting of TET2 for endogenous retrovirus control in pluripotent stem cells. Nat Genet 2018; 50(3): 443–451 https://doi.org/10.1038/s41588-018-0060-9
24
Z Sun, AV Smrcka, S Chen. WDR26 functions as a scaffolding protein to promote Gβγ-mediated phospholipase C β2 (PLCβ2) activation in leukocytes. J Biol Chem 2013; 288(23): 16715–16725 https://doi.org/10.1074/jbc.M113.462564
25
SJ Chen, X Wu, B Wadas, JH Oh, A Varshavsky. An N-end rule pathway that recognizes proline and destroys gluconeogenic enzymes. Science 2017; 355(6323): eaal3655 https://doi.org/10.1126/science.aal3655
26
H Hochgerner, A Zeisel, P Lönnerberg, S Linnarsson. Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing. Nat Neurosci 2018; 21(2): 290–299 https://doi.org/10.1038/s41593-017-0056-2
27
J Muhr, DW Hagey. The cell cycle and differentiation as integrated processes: cyclins and CDKs reciprocally regulate Sox and Notch to balance stem cell maintenance. BioEssays 2021; 43(7): e2000285 https://doi.org/10.1002/bies.202000285
LM Farkas, WB Huttner. The cell biology of neural stem and progenitor cells and its significance for their proliferation versus differentiation during mammalian brain development. Curr Opin Cell Biol 2008; 20(6): 707–715 https://doi.org/10.1016/j.ceb.2008.09.008
30
Z Guo, M Chen, Y Chao, C Cai, L Liu, L Zhao, L Li, QR Bai, Y Xu, W Niu, L Shi, Y Bi, D Ren, F Yuan, S Shi, Q Zeng, K Han, Y Shi, S Bian, G He. RGCC balances self-renewal and neuronal differentiation of neural stem cells in the developing mammalian neocortex. EMBO Rep 2021; 22(9): e51781 https://doi.org/10.15252/embr.202051781
31
EC Gilmore, CA Walsh. Genetic causes of microcephaly and lessons for neuronal development. Wiley Interdiscip Rev Dev Biol 2013; 2(4): 461–478 https://doi.org/10.1002/wdev.89
32
M Groszer, R Erickson, DD Scripture-Adams, JD Dougherty, J Le Belle, JA Zack, DH Geschwind, X Liu, HI Kornblum, H Wu. PTEN negatively regulates neural stem cell self-renewal by modulating G0-G1 cell cycle entry. Proc Natl Acad Sci USA 2006; 103(1): 111–116 https://doi.org/10.1073/pnas.0509939103
33
NM Wilpert, F Marguet, C Maillard, F Guimiot, J Martinovic, S Drunat, T Attié-Bitach, F Razavi, A Tessier, Y Capri, A Laquerrière, N Bahi-Buisson. Human neuropathology confirms projection neuron and interneuron defects and delayed oligodendrocyte production and maturation in FOXG1 syndrome. Eur J Med Genet 2021; 64(9): 104282 https://doi.org/10.1016/j.ejmg.2021.104282
34
R Gruber, Z Zhou, M Sukchev, T Joerss, PO Frappart, ZQ Wang. MCPH1 regulates the neuroprogenitor division mode by coupling the centrosomal cycle with mitotic entry through the Chk1-Cdc25 pathway. Nat Cell Biol 2011; 13(11): 1325–1334 https://doi.org/10.1038/ncb2342
35
T Maraldi, C Angeloni, C Prata, S Hrelia. NADPH oxidases: redox regulators of stem cell fate and function. antioxidants 2021; 10(6): 973 https://doi.org/10.3390/antiox10060973
36
RR Zhang, QY Cui, K Murai, YC Lim, ZD Smith, S Jin, P Ye, L Rosa, YK Lee, HP Wu, W Liu, ZM Xu, L Yang, YQ Ding, F Tang, A Meissner, C Ding, Y Shi, GL Xu. Tet1 regulates adult hippocampal neurogenesis and cognition. Cell Stem Cell 2013; 13(2): 237–245 https://doi.org/10.1016/j.stem.2013.05.006
37
K Izumi. Disorders of transcriptional regulation: an emerging category of multiple malformation syndromes. Mol Syndromol 2016; 7(5): 262–273 https://doi.org/10.1159/000448747
38
JE Bestman, LC Huang, J Lee-Osbourne, P Cheung, HT Cline. An in vivo screen to identify candidate neurogenic genes in the developing Xenopus visual system. Dev Biol 2015; 408(2): 269–291 https://doi.org/10.1016/j.ydbio.2015.03.010
39
M Nassan, Q Li, PE Croarkin, W Chen, CL Colby, M Veldic, SL McElroy, GD Jenkins, E Ryu, JM Cunningham, M Leboyer, MA Frye, JM Biernacka. A genome wide association study suggests the association of muskelin with early onset bipolar disorder: implications for a GABAergic epileptogenic neurogenesis model. J Affect Disord 2017; 208: 120–129 https://doi.org/10.1016/j.jad.2016.09.049