| 1 |
Allshire RC, Karpen GH (2008) Epigenetic regulation of centromeric chromatin: old dogs, new tricks? Nat Rev Genet9 (12): 923-937
doi: 10.1038/nrg2466
|
| 2 |
Allshire RC, Nimmo ER (1995) Mutations derepressing silent centromeric domains in fission yeast disrupt chromosome segregation. Genes Dev9(2): 218-233
doi: 10.1101/gad.9.2.218
|
| 3 |
Amor DJ, Kalitsis P (2004) Building the centromere: from foundation proteins to 3D organization. Trends Cell Biol14(7): 359-368
doi: 10.1016/j.tcb.2004.05.009
|
| 4 |
Bannister AJ, Zegerman P (2001) Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature410(6824): 120-124
doi: 10.1038/35065138
|
| 5 |
Bayne EH, White SA (2010) Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity. Cell40(5): 666-677
doi: 10.1016/j.cell.2010.01.038
|
| 6 |
Bell SP, Mitchell J (1995) The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencing. Cell83(4): 563-568
doi: 10.1016/0092-8674(95)90096-9
|
| 7 |
Bernard P, Maure JF (2001) Requirement of heterochromatin for cohesion at centromeres. Science294(5551): 2539-2542
doi: 10.1126/science.1064027
|
| 8 |
Bjerling P, Silverstein RA (2002) Functional divergence between histone deacetylases in fission yeast by distinct cellular localization and in vivo specificity. Mol Cell Biol22(7): 2170-2181
doi: 10.1128/MCB.22.7.2170-2181.2002
|
| 9 |
Black BE, Cleveland DW (2011) Epigenetic centromere propagation and the nature of CENP-a nucleosomes. Cell144(4): 471-479
doi: 10.1016/j.cell.2011.02.002
|
| 10 |
Bloom K, Yeh E (2010) Tension management in the kinetochore. Curr Biol20(23): R1040-R1048
doi: 10.1016/j.cub.2010.10.055
|
| 11 |
Bui M, Dimitriadis EK (2012) Cell-cycle-dependent structural transitions in the human CENP-A nucleosome in vivo. Cell150(2): 317-326
doi: 10.1016/j.cell.2012.05.035
|
| 12 |
Burgers PM (2009) Polymerase dynamics at the eukaryotic DNA replication fork. J Biol Chem284(7): 4041-4045
doi: 10.1074/jbc.R800062200
|
| 13 |
Buscaino A, White SA (2012) Raf1 is a DCAF for the Rik1 DDB1-like protein and has separable roles in siRNA generation and chromatin modification. PLoS Genet8(2): e1002499
doi: 10.1371/journal.pgen.1002499
|
| 14 |
Buscaino A, Lejeune E (2013) Distinct roles for Sir2 and RNAi in centromeric heterochromatin nucleation, spreading and maintenance. EMBO J32(9): 1250-1264
doi: 10.1038/emboj.2013.72
|
| 15 |
Camahort R, Li B (2007) Scm3 is essential to recruit the histone h3 variant cse4 to centromeres and to maintain a functional kinetochore. Mol Cell26(6): 853-865
doi: 10.1016/j.molcel.2007.05.013
|
| 16 |
Carroll CW, Straight AF (2006) Centromere formation: from epigenetics to self-assembly. Trends Cell Biol16(2): 70-78
doi: 10.1016/j.tcb.2005.12.008
|
| 17 |
Chan SW, Zilberman D (2004) RNA silencing genes control de novo DNA methylation. Science303(5662): 1336
doi: 10.1126/science.1095989
|
| 18 |
Chen ES, Saitoh S (2003) A cell cycle-regulated GATA factor promotes centromeric localization of CENP-A in fission yeast. Mol Cell11(1): 175-187
doi: 10.1016/S1097-2765(03)00011-X
|
| 19 |
Chen ES, Zhang K (2008) Cell cycle control of centromeric repeat transcription and heterochromatin assembly. Nature451(7179): 734-737
doi: 10.1038/nature06561
|
| 20 |
Chikashige Y, Kinoshita N (1989) Composite motifs and repeat symmetry in S. pombe centromeres: direct analysis by integration of NotI restriction sites. Cell57(5): 739-751
doi: 10.1016/0092-8674(89)90789-7
|
| 21 |
Christensen TW, Tye BK (2003) Drosophila MCM10 interacts with members of the prereplication complex and is required for proper chromosome condensation. Mol Biol Cell14(6): 2206-2215
doi: 10.1091/mbc.E02-11-0706
|
| 22 |
Chuang LS, Ian HI (1997) Human DNA-(cytosine-5) methyltransferase-PCNA complex as a target for p21WAF1. Science277(5334): 1996-2000
doi: 10.1126/science.277.5334.1996
|
| 23 |
Cottarel G, Shero JH (1989) A 125-base-pair CEN6 DNA fragment is sufficient for complete meiotic and mitotic centromere functions in Saccharomyces cerevisiae. Mol Cell Biol9(8): 3342-3349
|
| 24 |
Couture JF, Trievel RC (2006) Histone-modifying enzymes: encrypting an enigmatic epigenetic code. Curr Opin Struct Biol16(6): 753-760
doi: 10.1016/j.sbi.2006.10.002
|
| 25 |
Cowieson NP, Partridge JF (2000) Dimerisation of a chromo shadow domain and distinctions from the chromodomain as revealed by structural analysis. Curr Biol10(9): 517-525
doi: 10.1016/S0960-9822(00)00467-X
|
| 26 |
Durso G, Nurse P (1997) Schizosaccharomyces pombe cdc20(+) encodes DNA polymerase epsilon and is required for chromosomal replication but not for the S phase checkpoint. Proc Natl Acad Sci USA94(23): 12491-12496
doi: 10.1073/pnas.94.23.12491
|
| 27 |
Dutta A, Bell SP (1997) Initiation of DNA replication in eukaryotic cells. Annu Rev Cell Dev Biol13: 293-332
doi: 10.1146/annurev.cellbio.13.1.293
|
| 28 |
Dziak R, Leishman D (2003) Evidence for a role of MCM (minichromosome maintenance) 5 in transcriptional repression of subtelomeric and Ty-proximal genes in Saccharomyces cerevisiae. J Biol Chem278(30): 27372-27381
doi: 10.1074/jbc.M301110200
|
| 29 |
Ehrenhofer-Murray AE, Kamakaka RT (1999) A role for the replication proteins PCNA, RF-C, polymerase epsilon and Cdc45 in transcriptional silencing in Saccharomyces cerevisiae. Genetics153(3): 1171-1182
|
| 30 |
Fischer T, Cui B (2009) Diverse roles of HP1 proteins in heterochromatin assembly and functions in fission yeast. Proc Natl Acad Sci USA106(22): 8998-9003
doi: 10.1073/pnas.0813063106
|
| 31 |
Fischle W, Wang Y (2003) Binary switches and modification cassettes in histone biology and beyond. Nature425(6957): 475-479
doi: 10.1038/nature02017
|
| 32 |
Foltz DR, Jansen LE (2009) Centromere-specific assembly of CENP-a nucleosomes is mediated by HJURP. Cell137(3): 472-484
doi: 10.1016/j.cell.2009.02.039
|
| 33 |
Forsburg SL, Rhind N (2006) Basic methods for fission yeast. Yeast23(3): 173-183
doi: 10.1002/yea.1347
|
| 34 |
Foss M, McNally FJ (1993) Origin recognition complex (ORC) in transcriptional silencing and DNA replication in S. cerevisiae. Science262(5141): 1838-1844
doi: 10.1126/science.8266071
|
| 35 |
Fox CA, Loo S (1995) The origin recognition complex has essential functions in transcriptional silencing and chromosomal replication. Genes Dev9(8): 911-924
doi: 10.1101/gad.9.8.911
|
| 36 |
Gonzalez M, He H (2013) Cell cycle-dependent deposition of CENP-A requires the Dos1/2-Cdc20 complex. Proc Natl Acad Sci USA110(2): 606-611
doi: 10.1073/pnas.1214874110
|
| 37 |
Guerin TM, Palladino F (2013) Transgenerational functions of small RNA pathways in controlling gene expression in C. elegans. Epigenetics9(1): 37-44
|
| 38 |
Hall IM, Noma K (2003) RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast. Proc Natl Acad Sci USA100(1): 193-198
doi: 10.1073/pnas.232688099
|
| 39 |
Hatfield MD, Reis AM (2006) Identification of MMS19 domains with distinct functions in NER and transcription. DNA Repair5(8): 914-924
doi: 10.1016/j.dnarep.2006.05.007
|
| 40 |
Henderson DS, Banga SS (1994) Mutagen sensitivity and suppression of position-effect variegation result from mutations in mus209, the Drosophila gene encoding PCNA. EMBO J13 (6): 1450-1459
|
| 41 |
Henikoff S, Furuyama T (2010) Epigenetic inheritance of centromeres. Cold Spring Harb Symp Quant Biol75: 51-60
doi: 10.1101/sqb.2010.75.001
|
| 42 |
Hong EJ, Villen J (2005) A cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation. RNA Biol2(3): 106-111
doi: 10.4161/rna.2.3.2131
|
| 43 |
Horn PJ, Bastie JN (2005) A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation. Genes Dev19(14): 1705-1714
doi: 10.1101/gad.1328005
|
| 44 |
Huen MS, Sy SM (2008) Direct interaction between SET8 and proliferating cell nuclear antigen couples H4-K20 methylation with DNA replication. J Biol Chem283(17): 11073-11077
doi: 10.1074/jbc.C700242200
|
| 45 |
Hyun Y, Yun H (2013) The catalytic subunit of Arabidopsis DNA polymerase alpha ensures stable maintenance of histone modification. Development140(1): 156-166
doi: 10.1242/dev.084624
|
| 46 |
Irvine DV, Zaratiegui M (2006) Argonaute slicing is required for heterochromatic silencing and spreading. Science313(5790): 1134-1137
doi: 10.1126/science.1128813
|
| 47 |
Ito S, Tan LJ (2010) MMXD, a TFIIH-independent XPD-MMS19 protein complex involved in chromosome segregation. Mol Cell39(4): 632-640
doi: 10.1016/j.molcel.2010.07.029
|
| 48 |
Jansen LE, Black BE (2007) Propagation of centromeric chromatin requires exit from mitosis. J Cell Biol176(6): 795-805
doi: 10.1083/jcb.200701066
|
| 49 |
Jia S, Kobayashi R (2005) Ubiquitin ligase component Cul4 associates with Clr4 histone methyltransferase to assemble heterochromatin. Nat Cell Biol7(10): 1007-1013
doi: 10.1038/ncb1300
|
| 50 |
Kagansky A, Folco HD (2009) Synthetic heterochromatin bypasses RNAi and centromeric repeats to establish functional centromeres. Science324(5935): 1716-1719
doi: 10.1126/science.1172026
|
| 51 |
Kloc A, Zaratiegui M (2008) RNA interference guides histone modification during the S phase of chromosomal replication. Curr Biol18(7): 490-495
doi: 10.1016/j.cub.2008.03.016
|
| 52 |
Kuscu C, Zaratiegui M (2014) CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing. Proc Natl Acad Sci USA111(5): 1795-1800
doi: 10.1073/pnas.1313096111
|
| 53 |
Lee J, Zhou P (2007) DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase. Mol Cell26(6): 775-780
doi: 10.1016/j.molcel.2007.06.001
|
| 54 |
Li H, Stillman B (2012) The origin recognition complex: a biochemical and structural view. Subcell Biochem62: 37-58
doi: 10.1007/978-94-007-4572-8_3
|
| 55 |
Li F, Goto DB (2005) Two novel proteins, Dos1 and Dos2, interact with Rik1 to regulate heterochromatic RNA interference and histone modification. Curr Biol15(16): 1448-1457
doi: 10.1016/j.cub.2005.07.021
|
| 56 |
Li F, Huarte M (2008) Lid2 Is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin. Cell135(2): 272-283
doi: 10.1016/j.cell.2008.08.036
|
| 57 |
Li H, Motamedi MR (2009) An alpha motif at Tas3 C terminus mediates RITS cis spreading and promotes heterochromatic gene silencing. Mol Cell34(2): 155-167
doi: 10.1016/j.molcel.2009.02.032
|
| 58 |
Li F, Martienssen R (2011a) Coordination of DNA replication and histone modification by the Rik1-Dos2 complex. Nature475(7355): 244-248
doi: 10.1038/nature10161
|
| 59 |
Li PC, Chretien L (2011b) S. pombe replication protein Cdc18 (Cdc6) interacts with Swi6 (HP1) heterochromatin protein: region specific effects and replication timing in the centromere. Cell Cycle10(2): 323-336
doi: 10.4161/cc.10.2.14552
|
| 60 |
Liachko I, Tye BK (2005) Mcm10 is required for the maintenance of transcriptional silencing in Saccharomyces cerevisiae. Genetics171(2): 503-515
doi: 10.1534/genetics.105.042333
|
| 61 |
Liu J, Ren X (2010) Mutation in the catalytic subunit of DNA polymerase alpha influences transcriptional gene silencing and homologous recombination in Arabidopsis. Plant J61(1): 36-45
doi: 10.1111/j.1365-313X.2009.04026.x
|
| 62 |
Luger K (2003) Structure and dynamic behavior of nucleosomes. Curr Opin Genet Dev13(2): 127-135
doi: 10.1016/S0959-437X(03)00026-1
|
| 63 |
McIntosh JR, Grishchuk EL (2002) Chromosome-microtubule interactions during mitosis. Annu Rev Cell Dev Biol18: 193-219
doi: 10.1146/annurev.cellbio.18.032002.132412
|
| 64 |
Min J, Zhang X (2002) Structure of the SET domain histone lysine methyltransferase Clr4. Nat Struct Biol9(11): 828-832
|
| 65 |
Morris CA, Moazed D (2007) Centromere assembly and propagation. Cell128(4): 647-650
doi: 10.1016/j.cell.2007.02.002
|
| 66 |
Motamedi MR, Verdel A (2004) Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs. Cell119(6): 789-802
doi: 10.1016/j.cell.2004.11.034
|
| 67 |
Nakayama J, Allshire RC (2001a) Role for DNA polymerase alpha in epigenetic control of transcriptional silencing in fission yeast. EMBO J20(11): 2857-2866
doi: 10.1093/emboj/20.11.2857
|
| 68 |
Nakayama J, Rice JC (2001b) Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science292(5514): 110-113
doi: 10.1126/science.1060118
|
| 69 |
Natsume T, Tsutsui Y (2008) A DNA polymerase alpha accessory protein, Mcl1, is required for propagation of centromere structures in fission yeast. PLoS ONE3(5): 14
doi: 10.1371/journal.pone.0002221
|
| 70 |
Nicolas E, Yamada T (2007) Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection. Nat Struct Mol Biol14(5): 372-380
doi: 10.1038/nsmb1239
|
| 71 |
Pak DT, Pflumm M (1997) Association of the origin recognition complex with heterochromatin and HP1 in higher eukaryotes. Cell91(3): 311-323
doi: 10.1016/S0092-8674(00)80415-8
|
| 72 |
Pal-Bhadra M, Leibovitch BA (2004) Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science303(5658): 669-672
doi: 10.1126/science.1092653
|
| 73 |
Palmer DK, O’Day K (1991) Purification of the centromerespecific protein CENP-A and demonstration that it is a distinctive histone. Proc Natl Acad Sci USA88(9): 3734-3738
doi: 10.1073/pnas.88.9.3734
|
| 74 |
Papatriantafyllou M (2012) DNA metabolism: MMS19: CIA agent for DNA-linked affairs. Nat Rev Mol Cell Biol13(9): 538
doi: 10.1038/nrm3411
|
| 75 |
Pluta AF, Mackay AM (1995) The centromere: hub of chromosomal activities. Science270(5242): 1591-1594
doi: 10.1126/science.270.5242.1591
|
| 76 |
Poot RA, Bozhenok L (2004) The Williams syndrome transcription factor interacts with PCNA to target chromatin remodelling by ISWI to replication foci. Nat Cell Biol6(12): 1236-1244
doi: 10.1038/ncb1196
|
| 77 |
Prasanth SG, Prasanth KV (2004) Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance.EMBO J23(13): 2651-2663
doi: 10.1038/sj.emboj.7600255
|
| 78 |
Prasanth SG, Shen Z (2010) Human origin recognition complex is essential for HP1 binding to chromatin and heterochromatin organization (34): 15093-15098
doi: 10.1073/pnas.1009945107
|
| 79 |
Probst AV, Dunleavy E (2009) Epigenetic inheritance during the cell cycle. Nat Rev Mol Cell Biol10(3): 192-206
doi: 10.1038/nrm2640
|
| 80 |
Reyes-Turcu FE, Zhang K (2011) Defects in RNA quality control factors reveal RNAi-independent nucleation of heterochromatin. Nat Struct Mol Biol18(10): 1132-1138
doi: 10.1038/nsmb.2122
|
| 81 |
Rice JC, Allis CD (2001) Histone methylation versus histone acetylation: new insights into epigenetic regulation. Curr Opin Cell Biol13(3): 263-273
doi: 10.1016/S0955-0674(00)00208-8
|
| 82 |
Schalch T, Job G (2011) The Chp1-Tas3 core is a multifunctional platform critical for gene silencing by RITS. Nat Struct Mol Biol18(12): 1351-1357
doi: 10.1038/nsmb.2151
|
| 83 |
Schueler MG, Higgins AW (2001) Genomic and genetic definition of a functional human centromere. Science294(5540): 109-115
doi: 10.1126/science.1065042
|
| 84 |
Schuh M, Lehner CF (2007) Incorporation of Drosophila CID/ CENP-A and CENP-C into centromeres during early embryonic anaphase. Curr Biol17(3): 237-243
doi: 10.1016/j.cub.2006.11.051
|
| 85 |
Shankaranarayana GD, Motamedi MR (2003) Sir2 regulates histone H3 lysine 9 methylation and heterochromatin assembly in fission yeast. Curr Biol13(14): 1240-1246
doi: 10.1016/S0960-9822(03)00489-5
|
| 86 |
Shanker S, Job G (2010) Continuous requirement for the Clr4 complex but not RNAi for centromeric heterochromatin assembly in fission yeast harboring a disrupted RITS complex. PLoS Genet6(10): e1001174
doi: 10.1371/journal.pgen.1001174
|
| 87 |
Shareef MM, King C (2001) Drosophila heterochromatin protein 1 (HP1)/origin recognition complex (ORC) protein is associated with HP1 and ORC and functions in heterochromatin-induced silencing. Mol Biol Cell12(6): 1671-1685
doi: 10.1091/mbc.12.6.1671
|
| 88 |
Shivaraju M, Unruh JR (2012) Cell-cycle-coupled structural oscillation of centromeric nucleosomes in yeast. Cell150(2): 304-316
doi: 10.1016/j.cell.2012.05.034
|
| 89 |
Strahl BD, Allis CD (2000) The language of covalent histone modifications. Nature403(6765): 41-45
doi: 10.1038/47412
|
| 90 |
Sugiyama T, Cam HP (2007) SHREC, an effector complex for heterochromatic transcriptional silencing. Cell128(3): 491-504
doi: 10.1016/j.cell.2006.12.035
|
| 91 |
Sun X, Le HD (2003) Sequence analysis of a functional Drosophila centromere. Genome Res13(2): 182-194
doi: 10.1101/gr.681703
|
| 92 |
Taverna SD, Li H (2007) How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nat Struct Mol Biol14(11): 1025-1040
doi: 10.1038/nsmb1338
|
| 93 |
Thon G, Hansen KR (2005) The Clr7 and Clr8 directionality factors and the Pcu4 cullin mediate heterochromatin formation in the fission yeast Schizosaccharomyces pombe. Genetics171 (4): 1583-1595
doi: 10.1534/genetics.105.048298
|
| 94 |
Verdel A, Jia S (2004) RNAi-mediated targeting of heterochromatin by the RITS complex. Science303(5658): 672-676
doi: 10.1126/science.1093686
|
| 95 |
Volpe TA, Kidner C (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science297(5588): 1833-1837
doi: 10.1126/science.1074973
|
| 96 |
Waga S, Stillman B (1998) The DNA replication fork in eukaryotic cells. Annu Rev Biochem67: 721-751
doi: 10.1146/annurev.biochem.67.1.721
|
| 97 |
Weaver BA, Cleveland DW (2007) Aneuploidy: instigator and inhibitor of tumorigenesis. Cancer Res67(21): 10103-10105
doi: 10.1158/0008-5472.CAN-07-2266
|
| 98 |
Wood V, Gwilliam R (2002) The genome sequence of Schizosaccharomyces pombe. Nature415(6874): 871-880
doi: 10.1038/nature724
|
| 99 |
Wu XY, Li H (2001) The human homologue of the yeast DNA repair and TFIIH regulator MMS19 is an AF-1-specific coactivator of estrogen receptor. J Biol Chem276(26): 23962-23968
doi: 10.1074/jbc.M101041200
|
| 100 |
Yin H, Zhang X (2009) Epigenetic regulation, somatic homologous recombination, and abscisic acid signaling are influenced by DNA polymerase mutation in Arabidopsis. Plant Cell21(2): 386-402
doi: 10.1105/tpc.108.061549
|
| 101 |
Zaratiegui M, Castel SE (2011) RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II. Nature479(7371): 135-138
doi: 10.1038/nature10501
|
| 102 |
Zhang Z, Shibahara K (2000) PCNA connects DNA replication to epigenetic inheritance in yeast. Nature408(6809): 221-225
doi: 10.1038/35041601
|
| 103 |
Zhang K, Mosch K (2008) Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin. Nat Struct Mol Biol15(4): 381-388
doi: 10.1038/nsmb.1406
|
| 104 |
Zhu B, Reinberg D (2011) Epigenetic inheritance: uncontested? Cell es21(3): 435-441
|
