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Protein & Cell

ISSN 1674-800X

ISSN 1674-8018(Online)

CN 11-5886/Q

邮发代号 80-984

2019 Impact Factor: 10.164

Protein & Cell  2019, Vol. 10 Issue (6): 395-404   https://doi.org/10.1007/s13238-018-0586-8
  本期目录
Immune regulation by protein ubiquitination: roles of the E3 ligases VHL and Itch
Daisuke Aki1,2, Qian Li1, Hui Li1, Yun-Cai Liu1,2(), Jee Ho Lee2()
1. Institute for Immunology, Tsinghua-Peking Center for Life Sciences , School of Medicine, Tsinghua University, Beijing 100084, China
2. La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA
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Abstract

Protein ubiquitination is an important means of posttranslational modification which plays an essential role in the regulation of various aspects of leukocyte development and function. The specificity of ubiquitin tagging to a protein substrate is determined by E3 ubiquitin ligases via defined E3-substrate interactions. In this review, we will focus on two E3 ligases, VHL and Itch, to discuss the latest progress in understanding their roles in the differentiation and function of CD4+ T helper cell subsets, the stability of regulatory T cells, effector function of CD8+ T cells, as well as the development and maturation of innate lymphoid cells. The biological implications of these E3 ubiquitin ligases will be highlighted in the context of normal and dysregulated immune responses including the control of homeostasis, inflammation, auto-immune responses and anti-tumor immunity. Further elucidation of the ubiquitin system in immune cells will help in the design of new therapeutic interventions for human immunological diseases and cancer.

Key wordsubiquitin    E3 ligase    VHL    HIF    Itch    WWP2    Cbl-b    inflammation    autoimmunity
收稿日期: 2018-09-26      出版日期: 2019-06-19
Corresponding Author(s): Yun-Cai Liu,Jee Ho Lee   
 引用本文:   
. [J]. Protein & Cell, 2019, 10(6): 395-404.
Daisuke Aki, Qian Li, Hui Li, Yun-Cai Liu, Jee Ho Lee. Immune regulation by protein ubiquitination: roles of the E3 ligases VHL and Itch. Protein Cell, 2019, 10(6): 395-404.
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https://academic.hep.com.cn/pac/CN/10.1007/s13238-018-0586-8
https://academic.hep.com.cn/pac/CN/Y2019/V10/I6/395
1 RK Abbott, M Thayer, J Labuda, M Silva, P Philbrook, DW Cain, H Kojima, S Hatfield, S Sethumadhavan, A Ohtaet al. (2016) Germinal center hypoxia potentiates immunoglobulin class switch recombination. J Immunol 197:4014–4020
https://doi.org/10.4049/jimmunol.1601401
2 D Aki, H Li, W Zhang, M Zheng, C Elly, JH Lee, W Zou, YC Liu (2018) The E3 ligases Itch and WWP2 cooperate to limit TH2 differentiation by enhancing signaling through the TCR. Nat Immunol. 19:766–775
https://doi.org/10.1038/s41590-018-0137-8
3 D Aki, W Zhang, YC Liu (2015) The E3 ligase itch in immune regulation and beyond. Immunol Rev 266:6–26
https://doi.org/10.1111/imr.12301
4 K Bachmaier, C Krawczyk, I Kozieradzki, YY Kong, T Sasaki, A Oliveira-dos-Santos, S Mariathasan, D Bouchard, A Wakeham, A Itieet al. (2000) Negative regulation of lymphocyte activation and autoimmunity by the molecular adaptor Cbl-b. Nature 403:211–216
https://doi.org/10.1038/35003228
5 J Ben-Shoshan, S Maysel-Auslender, A Mor, G, Keren J George (2008) Hypoxia controls CD4+CD25+ regulatory T-cell homeostasis via hypoxia-inducible factor-1alpha. Eur J Immunol 38:2412–2418
https://doi.org/10.1002/eji.200838318
6 MP Biju, AK Neumann, SJ Bensinger, RS Johnson, LA Turka, VH Haase (2004) Vhlh gene deletion induces Hif-1-mediated cell death in thymocytes. Mol Cell Biol 24:9038–9047
https://doi.org/10.1128/MCB.24.20.9038-9047.2004
7 A Brigui, L Hofmann, C Arguelles, M Sanial, RA Holmgren, A Plessis (2015) Control of the dynamics and homeostasis of the Drosophila Hedgehog receptor Patched by two C2-WW-HECTE3 Ubiquitin ligases. Open Biol 5:150112
https://doi.org/10.1098/rsob.150112
8 N Chaudhary, S Maddika (2014) WWP2-WWP1 ubiquitin ligase complex coordinated by PPM1G maintains the balance between cellular p73 and DeltaNp73 levels. Mol Cell Biol 34:3754–3764
https://doi.org/10.1128/MCB.00101-14
9 Z Chen, H Jiang, W Xu, X Li, DR Dempsey, X Zhang, P Devreotes, C Wolberger, LM Amzel, SB Gabelliet al. (2017) A tunable brake for HECT ubiquitin ligases. Mol Cell 66(345–357):e346
https://doi.org/10.1016/j.molcel.2017.03.020
10 Z Chen, SN Thomas, DM Bolduc, X Jiang, X Zhang, C Wolberger, PA Cole (2016) Enzymatic analysis of PTEN ubiquitylation by WWP2 and NEDD4-1 E3 ligases. Biochemistry 55:3658–3666
https://doi.org/10.1021/acs.biochem.6b00448
11 YJ Chiang, HK Kole, K Brown, M Naramura, S Fukuhara, RJ Hu, IK Jang, JS Gutkind, E Shevach, H Gu (2000) Cbl-b regulates the CD28 dependence of T-cell activation. Nature 403:216–220
https://doi.org/10.1038/35003235
12 SH Cho, AL Raybuck, K Stengel, M Wei, TC Beck, E Volanakis, JW Thomas, S Hiebert, VH Haase, MR Boothby (2016) Germinal centre hypoxia and regulation of antibody qualities by a hypoxia response system. Nature 537:234–238
https://doi.org/10.1038/nature19334
13 ET Clambey, EN McNamee, JA Westrich, LE Glover, EL Campbell, P Jedlicka, EF de Zoeten, JC Cambier, KR Stenmark, SP Colganet al. (2012) Hypoxia-inducible factor-1 alpha-dependent induction of FoxP3 drives regulatory T-cell abundance and function during inflammatory hypoxia of the mucosa. Proc Natl Acad Sci USA 109:E2784–2793
https://doi.org/10.1073/pnas.1202366109
14 D Clever, R Roychoudhuri, MG Constantinides, MH Askenase, M Sukumar, CA Klebanoff, RL Eil, HD Hickman, Z Yu, JH Panet al. (2016) Oxygen sensing by T cells establishes an immunologically tolerant metastatic niche. Cell 166(1117–1131):e1114
https://doi.org/10.1016/j.cell.2016.07.032
15 MG Constantinides, BD McDonald, PA Verhoef, A Bendelac (2014) A committed precursor to innate lymphoid cells. Nature 508:397–401
https://doi.org/10.1038/nature13047
16 CA Corzo, T, Condamine L Lu, MJ Cotter, JI Youn, P Cheng, HI Cho, E Celis, DG Quiceno, T Padhyaet al. (2010) HIF-1alpha regulates function and differentiation of myeloid-derived suppressor cells in the tumor microenvironment. J Exp Med 207:2439–2453
https://doi.org/10.1084/jem.20100587
17 EV Dang, J Barbi, HY Yang, D Jinasena, H Yu, Y Zheng, Z Bordman, J Fu, Y Kim, HR Yenet al. (2011) Control of T(H)17/T(reg) balance by hypoxia-inducible factor 1. Cell 146:772–784
https://doi.org/10.1016/j.cell.2011.07.033
18 AL Doedens, AT Phan, MH Stradner, JK Fujimoto, JV Nguyen, E, Yang RS Johnson, AW Goldrath (2013) Hypoxia-inducible factors enhance the effector responses of CD8(+) T cells to persistent antigen. Nat Immunol 14:1173–1182
https://doi.org/10.1038/ni.2714
19 M Ebbo, A Crinier, F Vely, E Vivier (2017) Innate lymphoid cells: major players in inflammatory diseases. Nat Rev Immunol 17:665–678
https://doi.org/10.1038/nri.2017.86
20 P Eliasson, JI Jonsson (2010) The hematopoietic stem cell niche: low in oxygen but a nice place to be. J Cell Physiol 222:17–22
https://doi.org/10.1002/jcp.21908
21 JG Evans, KA Chavez-Rueda, A Eddaoudi, A Meyer-Bahlburg, DJ Rawlings, MR Ehrenstein, C Mauri (2007) Novel suppressive function of transitional 2 B cells in experimental arthritis. J Immunol 178:7868–7878
https://doi.org/10.4049/jimmunol.178.12.7868
22 D Fang, C Elly, B Gao, N Fang, Y Altman, C Joazeiro, T Hunter, N Copeland, N Jenkins, YC Liu (2002) Dysregulation of T lymphocyte function in itchy mice: a role for Itch in TH2 differentiation. Nat Immunol 3:281–287
https://doi.org/10.1038/ni763
23 S Gilberto, M Peter (2017) Dynamic ubiquitin signaling in cell cycle regulation. J Cell Biol 216:2259–2271
https://doi.org/10.1083/jcb.201703170
24 LP Hale, RD Braun, WM Gwinn, PK Greer, MW Dewhirst (2002) Hypoxia in the thymus: role of oxygen tension in thymocyte survival. Am J Physiol Heart Circ Physiol 282:H1467–1477
https://doi.org/10.1152/ajpheart.00682.2001
25 V, Heissmeyer F Macian, SH Im, R Varma, S Feske, K Venuprasad, H Gu, YC Liu, ML Dustin, A Rao (2004) Calcineurin imposes T cell unresponsiveness through targeted proteolysis of signaling proteins. Nat Immunol 5:255–265
https://doi.org/10.1038/ni1047
26 H Huang, MS Jeon, L Liao, C Yang, C Elly, JR 3rd Yates, YC Liu (2010) K33-linked polyubiquitination of T cell receptor-zeta regulates proteolysis-independent T cell signaling. Immunity 33:60–70
https://doi.org/10.1016/j.immuni.2010.07.002
27 CM Hustad, WL Perry, LD Siracusa, C Rasberry, L Cobb, BM Cattanach, R Kovatch, NG Copeland, NA Jenkins (1995) Molecular genetic characterization of six recessive viable alleles of the mouse agouti locus. Genetics 140:255–265
28 M Ivan, K Kondo, H Yang, W Kim, J Valiando, M Ohh, A Salic, JM Asara, WS Lane, WG Jr Kaelin (2001) HIFalpha targeted for VHLmediated destruction by proline hydroxylation: implications for O2 sensing. Science 292:464–468
https://doi.org/10.1126/science.1059817
29 HM Izquierdo, P Brandi, MJ Gomez, R Conde-Garrosa, E Priego, M Enamorado, S Martinez-Cano, I Sanchez, L Conejero, D Jimenez-Carreteroet al. (2018) Von hippel-lindau protein is required for optimal alveolar macrophage terminal differentiation, self-renewal, and function. Cell Rep 24:1738–1746
https://doi.org/10.1016/j.celrep.2018.07.034
30 J Jellusova, MH Cato, JR Apgar, P Ramezani-Rad, CR Leung, C Chen, AD Richardson, EM Conner, RJ Benschop, JR Woodgettet al. (2017) Gsk3 is a metabolic checkpoint regulator in B cells. Nat Immunol 18:303–312
https://doi.org/10.1038/ni.3664
31 MS Jeon, A Atfield, K Venuprasad, C Krawczyk, R Sarao, C Elly, C Yang, S Arya, K Bachmaier, L Suet al. (2004) Essential role of the E3 ubiquitin ligase Cbl-b in T cell anergy induction. Immunity 21:167–177
https://doi.org/10.1016/j.immuni.2004.07.013
32 J Jiang, N Wang, Y Jiang, H Tan, J Zheng, G Chen, Z Jia (2015) Characterization of substrate binding of the WW domains in human WWP2 protein. FEBS Lett 589:1935–1942
https://doi.org/10.1016/j.febslet.2015.05.021
33 HS Jin, Y Park, C Elly, YC Liu (2013) Itch expression by Treg cells controls Th2 inflammatory responses. J Clin Invest 123:4923–4934
https://doi.org/10.1172/JCI69355
34 CA Joazeiro, SS Wing, H Huang, JD Leverson, T Hunter, YC Liu (1999) The tyrosine kinase negative regulator c-Cbl as a RINGtype, E2-dependent ubiquitin-protein ligase. Science 286:309–312
https://doi.org/10.1126/science.286.5438.309
35 WG Jr Kaelin, ER Maher (1998) The VHL tumour-suppressor gene paradigm. Trends Genet 14:423–426
https://doi.org/10.1016/S0168-9525(98)01558-3
36 PJ Kallio, I Pongratz, K Gradin, J McGuire, L Poellinger (1997) Activation of hypoxia-inducible factor 1alpha: posttranscriptional regulation and conformational change by recruitment of the Arnt transcription factor. Proc Natl Acad Sci USA 94:5667–5672
https://doi.org/10.1073/pnas.94.11.5667
37 T Kamura, DM Koepp, MN Conrad, D Skowyra, RJ Moreland, O Iliopoulos, WS Lane, WG Jr Kaelin, SJ Elledge, RC Conawayet al. (1999) Rbx1, a component of the VHL tumor suppressor complex and SCF ubiquitin ligase. Science 284:657–661
https://doi.org/10.1126/science.284.5414.657
38 M Kathania, P Khare, M Zeng, B Cantarel, H Zhang, H Ueno, K Venuprasad (2016) Itch inhibits IL-17-mediated colon inflammation and tumorigenesis by ROR-gammat ubiquitination. Nat Immunol 17:997–1004
https://doi.org/10.1038/ni.3488
39 WY Kim, WG Kaelin (2004) Role of VHL gene mutation in human cancer. J Clin Oncol 22:4991–5004
https://doi.org/10.1200/JCO.2004.05.061
40 H Kojima, H Gu, S Nomura, CC Caldwell, T Kobata, P Carmeliet, GL Semenza, MV Sitkovsky (2002) Abnormal B lymphocyte development and autoimmunity in hypoxia-inducible factor 1alpha-deficient chimeric mice. Proc Natl Acad Sci USA 99:2170–2174
https://doi.org/10.1073/pnas.052706699
41 D Komander (2009) The emerging complexity of protein ubiquitination. Biochem Soc Trans 37:937–953
https://doi.org/10.1042/BST0370937
42 AAK Layman, SL Sprout, D Phillips, PM Oliver (2017) Ndfip1 restricts Th17 cell potency by limiting lineage stability and proinflammatory cytokine production. Sci Rep 7:39649
https://doi.org/10.1038/srep39649
43 JH Lee, C, Elly Y Park, YC Liu (2015) E3 ubiquitin ligase VHL regulates hypoxia-inducible factor-1alpha to maintain regulatory T Cell stability and suppressive capacity. Immunity 42:1062–1074
https://doi.org/10.1016/j.immuni.2015.05.016
44 Q Li, D Li, X Zhang, Q Wan, W Zhang, M Zheng, L Zou, C Elly, JH Lee, YC Liu (2018) E3 ligase VHL promotes group 2 innate lymphoid cell maturation and function via glycolysis inhibition and induction of interleukin-33 receptor. Immunity 48(258–270):e255
https://doi.org/10.1016/j.immuni.2017.12.013
45 YC Liu (2004) Ubiquitin ligases and the immune response. Annu Rev Immunol 22:81–127
https://doi.org/10.1146/annurev.immunol.22.012703.104813
46 NJ Lohr, JP Molleston, KA Strauss, W Torres-Martinez, EA Sherman, RH Squires, NL Rider, KR Chikwava, OW Cummings, DH Mortonet al. (2010) Human ITCH E3 ubiquitin ligase deficiency causes syndromic multisystem autoimmune disease. Am J Hum Genet 86:447–453
https://doi.org/10.1016/j.ajhg.2010.01.028
47 KL Lorick, JP Jensen, S Fang, AM Ong, S Hatakeyama, AM Weissman (1999) RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci USA 96:11364–11369
https://doi.org/10.1073/pnas.96.20.11364
48 M Matsumoto, A Baba, T Yokota, H Nishikawa, Y Ohkawa, H Kayama, A Kallies, SL Nutt, S Sakaguchi, K Takedaet al. (2014) Interleukin-10-producing plasmablasts exert regulatory function in autoimmune inflammation. Immunity 41:1040–1051
https://doi.org/10.1016/j.immuni.2014.10.016
49 T, Matsushita K Yanaba, JD Bouaziz, M Fujimoto, TF Tedder (2008) Regulatory B cells inhibit EAE initiation in mice while other B cells promote disease progression. J Clin Invest 118:3420–3430
https://doi.org/10.1172/JCI36030
50 PH Maxwell, MS Wiesener, GW Chang, SC Clifford, EC Vaux, ME Cockman, CC Wykoff, CW Pugh, ER Maher, PJ Ratcliffe (1999) The tumour suppressor protein VHL targets hypoxiainducible factors for oxygen-dependent proteolysis. Nature 399:271–275
https://doi.org/10.1038/20459
51 X Meng, B Grotsch, Y Luo, KX Knaup, MS Wiesener, XX, Chen J, Jantsch S Fillatreau, G Schett, A Bozec (2018) Hypoxiainducible factor-1alpha is a critical transcription factor for IL-10- producing B cells in autoimmune disease. Nat Commun 9:251
https://doi.org/10.1038/s41467-017-02683-x
52 MB Metzger, VA Hristova, AM Weissman (2012) HECT and RING finger families of E3 ubiquitin ligases at a glance. J Cell Sci 125:531–537
https://doi.org/10.1242/jcs.091777
53 H Nakashima, Y Hamaguchi, R Watanabe, N Ishiura, Y Kuwano, H Okochi, Y Takahashi, K Tamaki, S, Sato TF Tedderet al. (2010) CD22 expression mediates the regulatory functions of peritoneal B-1a cells during the remission phase of contact hypersensitivity reactions. J Immunol 184:4637–4645
https://doi.org/10.4049/jimmunol.0901719
54 AK Neumann, J Yang, MP Biju, SK Joseph, RS Johnson, VH Haase, BD Freedman, LA Turka (2005) Hypoxia inducible factor 1 alpha regulates T cell receptor signal transduction. Proc Natl Acad Sci USA 102:17071–17076
https://doi.org/10.1073/pnas.0506070102
55 HF O’Connor, N Lyon, JW Leung, P Agarwal, CD Swaim, KM Miller, JM Huibregtse (2015) Ubiquitin-Activated Interaction Traps (UBAITs) identify E3 ligase binding partners. EMBO Rep 16:1699–1712
https://doi.org/10.15252/embr.201540620
56 AE Overacre-Delgoffe, M Chikina, RE Dadey, H Yano, EA Brunazzi, G Shayan, W Horne, JM Moskovitz, JK Kolls, C Sanderet al. (2017) Interferon-gamma drives treg fragility to promote antitumor immunity. Cell 169(1130–1141):e1111
https://doi.org/10.1016/j.cell.2017.05.005
57 A Palazon, AW Goldrath, V Nizet, RS Johnson (2014) HIF transcription factors, inflammation, and immunity. Immunity 41:518–528
https://doi.org/10.1016/j.immuni.2014.09.008
58 WL Perry, CM Hustad, DA Swing, TN O’Sullivan, NA Jenkins, NG Copeland (1998) The itchy locus encodes a novel ubiquitin protein ligase that is disrupted in a18H mice. Nat Genet 18:143–146
https://doi.org/10.1038/ng0298-143
59 AT Phan, AL Doedens, A Palazon, PA Tyrakis, KP Cheung, RS Johnson, AW Goldrath (2016) Constitutive glycolytic metabolism supports CD8(+) T cell effector memory differentiation during viral infection. Immunity 45:1024–1037
https://doi.org/10.1016/j.immuni.2016.10.017
60 C Riling, H Kamadurai, S Kumar, CE O’Leary, KP Wu, EE Manion, M Ying, BA Schulman, PM Oliver (2015) Itch WW domains inhibit its E3 ubiquitin ligase activity by blocking E2-E3 ligase transthiolation. J Biol Chem 290:23875–23887
https://doi.org/10.1074/jbc.M115.649269
61 J Rius, M Guma, C Schachtrup, K Akassoglou, AS Zinkernagel, V Nizet, RS Johnson, GG Haddad, M Karin (2008) NF-kappaB links innate immunity to the hypoxic response through transcriptional regulation of HIF-1alpha. Nature 453:807–811
https://doi.org/10.1038/nature06905
62 LZ Shi, R Wang, G Huang, P Vogel, G Neale, DR Green, H Chi (2011) HIF1alpha-dependent glycolytic pathway orchestrates a metabolic checkpoint for the differentiation of TH17 and Treg cells. J Exp Med 208:1367–1376
https://doi.org/10.1084/jem.20110278
63 H Spits, D Artis, M Colonna, A Diefenbach, JP Di Santo, G Eberl, S Koyasu, RM Locksley, AN McKenzie, RE Mebiuset al. (2013) Innate lymphoid cells–a proposal for uniform nomenclature. Nat Rev Immunol 13:145–149
https://doi.org/10.1038/nri3365
64 CE Stebbins, WG Jr Kaelin, NP Pavletich (1999) Structure of the VHL-ElonginC-ElonginB complex: implications for VHL tumor suppressor function. Science 284:455–461
https://doi.org/10.1126/science.284.5413.455
65 EL Stone, M Pepper, CD Katayama, YM Kerdiles, CY Lai, E Emslie, YC Lin, E Yang, AW Goldrath, MO Liet al. (2015) ICOS coreceptor signaling inactivates the transcription factor FOXO1 to promote Tfh cell differentiation. Immunity 42:239–251
https://doi.org/10.1016/j.immuni.2015.01.017
66 K Venuprasad, C Elly, M Gao, S Salek-Ardakani, Y Harada, JL Luo, C Yang, M Croft, K Inoue , M Karinet al. (2006) Convergence of Itch-induced ubiquitination with MEKK1-JNK signaling in Th2 tolerance and airway inflammation. J Clin Invest 116:1117–1126
https://doi.org/10.1172/JCI26858
67 K Venuprasad, H Huang, Y, Harada C Elly, M Subramaniam, T Spelsberg, J Su, YC Liu (2008) The E3 ubiquitin ligase Itch regulates expression of transcription factor Foxp3 and airway inflammation by enhancing the function of transcription factor TIEG1. Nat Immunol 9:245–253
https://doi.org/10.1038/ni1564
68 SR Walmsley, C Print, N Farahi, C Peyssonnaux, RS Johnson, T Cramer, A Sobolewski, AM Condliffe, AS Cowburn, N Johnsonet al. (2005) Hypoxia-induced neutrophil survival is mediated by HIF-1alpha-dependent NF-kappaB activity. J Exp Med 201:105–115
https://doi.org/10.1084/jem.20040624
69 N Xiao, D Eto, C Elly, G Peng, S Crotty, YC Liu (2014) The E3 ubiquitin ligase Itch is required for the differentiation of follicular helper T cells. Nat Immunol 15:657–666
https://doi.org/10.1038/ni.2912
70 H Zhang, P Gao, R Fukuda, G Kumar, B Krishnamachary, KI Zeller, CV Dang, GL Semenza (2007) HIF-1 inhibits mitochondrial biogenesis and cellular respiration in VHL-deficient renal cell carcinoma by repression of C-MYC activity. Cancer Cell 11:407–420
https://doi.org/10.1016/j.ccr.2007.04.001
71 K Zhu, Z Shan, X Chen, Y Cai, L Cui, W Yao, Z Wang, P Shi, C Tian, J Louet al. (2017) Allosteric auto-inhibition and activation of the Nedd4 family E3 ligase Itch. EMBO Rep 18:1618–1630
https://doi.org/10.15252/embr.201744454
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