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Quantitative Biology

ISSN 2095-4689

ISSN 2095-4697(Online)

CN 10-1028/TM

邮发代号 80-971

Quantitative Biology  2022, Vol. 10 Issue (2): 139-149   https://doi.org/10.15302/J-QB-022-0281
  本期目录
Physics-informed machine learning for the COVID-19 pandemic: Adherence to social distancing and short-term predictions for eight countries
Georgios D. Barmparis(), Giorgos P. Tsironis()
Institute of Theoretical and Computational Physics and Department of Physics, University of Crete, Heraklion 71003, Greece
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Abstract

Background: The analysis of COVID-19 infection data through the eye of Physics-inspired Artificial Intelligence leads to a clearer understanding of the infection dynamics and assists in predicting future evolution. The spreading of the pandemic during the first half of 2020 was curtailed to a larger or lesser extent through social distancing measures imposed by most countries. In the context of the standard Susceptible-Infected-Recovered (SIR) model, changes in social distancing enter through time-dependent infection rates.

Methods: In this work we use machine learning and the infection dynamical equations of SIR to extract from the infection data the degree of social distancing and, through it, assess the effectiveness of the imposed measures.

Results: Quantitative machine learning analysis is applied to eight countries with infection data from the first viral wave. We find as two extremes Greece and USA where the measures were successful and unsuccessful, respectively, in limiting spreading. This physics-based neural network approach is employed to the second wave of the infection, and by training the network with the new data, we extract the time-dependent infection rate and make short-term predictions with a week-long or even longer horizon. This algorithmic approach is applied to all eight countries with good short-term results. The data for Greece is analyzed in more detail from August to December 2020.

Conclusions: The model captures the essential spreading dynamics and gives useful projections for the spreading, both in the short-term but also for a more intermediate horizon, based on specific social distancing measures that are extracted directly from the data.

Key wordsCOVID-19    physics-informed machine learning    SIR    time-dependent infection rate    short-term predictions
收稿日期: 2021-04-09      出版日期: 2022-07-07
Corresponding Author(s): Georgios D. Barmparis,Giorgos P. Tsironis   
 引用本文:   
. [J]. Quantitative Biology, 2022, 10(2): 139-149.
Georgios D. Barmparis, Giorgos P. Tsironis. Physics-informed machine learning for the COVID-19 pandemic: Adherence to social distancing and short-term predictions for eight countries. Quant. Biol., 2022, 10(2): 139-149.
 链接本文:  
https://academic.hep.com.cn/qb/CN/10.15302/J-QB-022-0281
https://academic.hep.com.cn/qb/CN/Y2022/V10/I2/139
Fig.1  
Country Total cases Error(%) α ( t ) + 10%(% Difference) α ( t ) ? 10%(% Difference) R 2
Reported Predicted
USA 1961185 1945830 ?0.8 1793214 (?7.8) 2063029 (6.0) 0.944
Italy 240961 275667 14.4 259349 (?5.9) 284978 (3.4) 0.863
Spain 245938 280859 14.2 249833 (?11.1) 298190 (6.2) 0.791
UK 286141 312211 9.1 217528 (?30.3) 382591 (22.5) 0.872
Germany 186839 215563 9.5 182532 (?15.3) 233021 (8.1) 0.776
The Netherlands 50412 55040 9.2 52524 (?4.6) 56583 (2.8) 0.837
France 149668 163580 9.3 117539 (?28.2) 187154 (14.4) 0.702
Greece 2967 3014 1.6 2794 (?7.3) 3155 (4.7) 0.540
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