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Characterization of a phenanthrene-degrading methanogenic community |
Quanhui Ye, Chengyue Liang, Chongyang Wang, Yun Wang, Hui Wang( ) |
State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China* |
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Abstract The mixed samples of contaminated soil, sludge and coke wastewater showed great phenanthrene methanogenic degradation potential. Comamonadaceae, Nocardiaceae and Methanobacterium were dominant members. Hexane, hexadecane and benzene could enhance phenanthrene degradation. Polycyclic aromatic hydrocarbons (PAHs) often occur in oil-contaminated soil, coke wastewater and domestic sludge; however, associated PAH degraders in these environments are not clear. Here we evaluated phenanthrene degradation potential in the mixed samples of above environments, and obtained a methanogenic community with different microbial profile compared to those from sediments. Phenanthrene was efficiently degraded (1.26 mg/L/d) and nonstoichiometric amount of methane was produced simultaneously. 16S rRNA gene sequencing demonstrated that bacterial populations were mainly associated with Comamonadaceae Nocardiaceae and Thermodesulfobiaceae, and that methanogenic archaea groups were dominated by Methanobacterium and Methanothermobacter. Substances such as hexane, hexadecane, benzene and glucose showed the most positive effects on phenanthrene degradation. Substrate utilization tests indicated that this culture could not utilize other PAHs. These analyses could offer us some suggestions on the putative phenanthrene-degrading microbes in such environments, and might help us develop strategies for the removal of PAHs from contaminated soil and sludge.
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Keywords
Phenanthrene degradation potential
Methanogenic
Bacterial population
Archaeal group
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Corresponding Author(s):
Hui Wang
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Issue Date: 21 September 2018
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1 |
Aislabie J, McLeod M, Fraser R (1998). Potential for biodegradation of hydrocarbons in soil from the Ross Dependency, Antarctica. Applied Microbiology and Biotechnology, 49(2): 210–214
https://doi.org/10.1007/s002530051160
|
2 |
Bengtsson G, Zerhouni P (2003). Effects of carbon substrate enrichment and DOC concentration on biodegradation of PAHs in soil. Journal of Applied Microbiology, 94(4): 608–617
https://doi.org/10.1046/j.1365-2672.2003.01873.x
pmid: 12631196
|
3 |
Berdugo-Clavijo C, Dong X, Soh J, Sensen C W, Gieg L M (2012). Methanogenic biodegradation of two-ringed polycyclic aromatic hydrocarbons. FEMS Microbiology Ecology, 81(1): 124–133
https://doi.org/10.1111/j.1574-6941.2012.01328.x
pmid: 22324881
|
4 |
Canul-Chan M, Sánchez-González M, González-Burgos A, Zepeda A, Rojas-Herrera R (2017). Population structures shift during the biodegradation of crude and fuel oil by an indigenous consortium. International Journal of Environmental Science and Technology, 15(1): 1–16
https://doi.org/10.1007/s13762-017-1362-7
|
5 |
Chang B V, Chang I T, Yuan S Y (2008a). Anaerobic degradation of phenanthrene and pyrene in mangrove sediment. Bulletin of Environmental Contamination and Toxicology, 80(2): 145–149
https://doi.org/10.1007/s00128-007-9333-1
pmid: 18188486
|
45 |
Chang B V, Chang S W, Yuan S Y. Anaerobic degradation of polycyclic aromatic hydrocarbons in sludge. Adv Environ Res, 2003, 7(3): 623–628
|
46 |
Chang B V, Shiung L C, Yuan S Y. Anaerobic biodegradation of polycyclic aromatic hydrocarbon in soil. Chemosphere, 2002, 48: 717–724
|
6 |
Chang M W, Holoman T P, Yi H (2008b). Molecular characterization of surfactant-driven microbial community changes in anaerobic phenanthrene-degrading cultures under methanogenic conditions. Biotechnology Letters, 30(9): 1595–1601
https://doi.org/10.1007/s10529-008-9731-4
pmid: 18421419
|
7 |
Chang W, Um Y, Hoffman B, Pulliam Holoman T R (2005). Molecular characterization of polycyclic aromatic hydrocarbon (PAH)-degrading methanogenic communities. Biotechnology Progress, 21(3): 682–688
https://doi.org/10.1021/bp049579l
pmid: 15932243
|
8 |
Chang W, Um Y, Holoman T R (2006). Polycyclic aromatic hydrocarbon (PAH) degradation coupled to methanogenesis. Biotechnology Letters, 28(6): 425–430
https://doi.org/10.1007/s10529-005-6073-3
pmid: 16614909
|
9 |
Chen S, Aitken M D (1999). Salicylate stimulates the degradation of high-molecular weight polycyclic aromatic hydrocarbons by Pseudomonas saccharophila P15. Environmental Science & Technology, 33(3): 435–439
https://doi.org/10.1021/es9805730
|
10 |
Davidova I A, Gieg L M, Duncan K E, Suflita J M (2007). Anaerobic phenanthrene mineralization by a carboxylating sulfate-reducing bacterial enrichment. ISME Journal, 1(5): 436–442
https://doi.org/10.1038/ismej.2007.48
pmid: 18043662
|
11 |
Fang T, Pan R, Jiang J, He F, Wang H (2016). Effect of salinity on community structure and naphthalene dioxygenase gene diversity of a halophilic bacterial consortium. Frontiers of Environmental Science & Engineering, 10(6): 16
https://doi.org/10.1007/s11783-016-0888-0
|
12 |
Fuchedzhieva N, Karakashev D, Angelidaki I (2008). Anaerobic biodegradation of fluoranthene under methanogenic conditions in presence of surface-active compounds. Journal of Hazardous Materials, 153(1-2): 123–127
https://doi.org/10.1016/j.jhazmat.2007.08.027
pmid: 17869417
|
13 |
Galushko A, Minz D, Schink B, Widdel F (1999). Anaerobic degradation of naphthalene by a pure culture of a novel type of marine sulphate-reducing bacterium. Environmental Microbiology, 1(5): 415–420
https://doi.org/10.1046/j.1462-2920.1999.00051.x
pmid: 11207761
|
14 |
Gómez R S G, Pandiyan T, Iris V E A, Luna-Pabello V, de Bazúa C D (2004). Spectroscopic determination of poly-aromatic compounds in petroleum contaminated soils. Water, Air, and Soil Pollution, 158(1): 137–151
https://doi.org/10.1023/B:WATE.0000044829.26130.1c
|
15 |
Goyal A K, Zylstra G J (1996). Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39. Applied and Environmental Microbiology, 62(1): 230–236
pmid: 8572701
|
16 |
Gray N D, Sherry A, Larter S R, Erdmann M, Leyris J, Liengen T, Beeder J, Head I M (2009). Biogenic methane production in formation waters from a large gas field in the North Sea. Extremophiles, 13(3): 511–519
https://doi.org/10.1007/s00792-009-0237-3
pmid: 19305943
|
17 |
Haritash A K, Kaushik C P (2009). Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review. Journal of Hazardous Materials, 169(1-3): 1–15
https://doi.org/10.1016/j.jhazmat.2009.03.137
pmid: 19442441
|
18 |
Huang Y, Zhang J, Zhu L (2013). Evaluation of the application potential of bentonites in phenanthrene bioremediation by characterizing the biofilm community. Bioresource Technology, 134: 17–23
https://doi.org/10.1016/j.biortech.2013.02.009
pmid: 23500554
|
19 |
Jiménez N, Viñas M, Bayona J M, Albaiges J, Solanas A M (2007). The Prestige oil spill: bacterial community dynamics during a field biostimulation assay. Applied Microbiology and Biotechnology, 77(4): 935–945
https://doi.org/10.1007/s00253-007-1229-9
pmid: 17943279
|
20 |
Keith L H, Telliard W A (1979). Priority pollutants I—A perspective view. Environmental Science & Technology, 13(4): 416–423
https://doi.org/10.1021/es60152a601
|
21 |
Kong X, Yu S, Xu S, Fang W, Liu J, Li H (2018). Effect of Fe0 addition on volatile fatty acids evolution on anaerobic digestion at high organic loading rates. Waste Management (New York, N.Y.), 71: 719–727
https://doi.org/10.1016/j.wasman.2017.03.019
pmid: 28320620
|
22 |
Kryachko Y, Dong X, Sensen C W, Voordouw G (2012). Compositions of microbial communities associated with oil and water in a mesothermic oil field. Antonie van Leeuwenhoek, 101(3): 493–506
https://doi.org/10.1007/s10482-011-9658-y
pmid: 22038128
|
23 |
Kümmel S, Herbst F A, Bahr A, Duarte M, Pieper D H, Jehmlich N, Seifert J, von Bergen M, Bombach P, Richnow H H, Vogt C (2015). Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers. FEMS Microbiology Ecology, 91(3): 1–13
https://doi.org/10.1093/femsec/fiv006
pmid: 25764566
|
24 |
Li H, Chang J, Liu P, Fu L, Ding D, Lu Y (2015). Direct interspecies electron transfer accelerates syntrophic oxidation of butyrate in paddy soil enrichments. Environmental Microbiology, 17(5): 1533–1547
https://doi.org/10.1111/1462-2920.12576
pmid: 25059331
|
25 |
Liang B, Wang L Y, Mbadinga S M, Liu J F, Yang S Z, Gu J D, Mu B Z (2015). Anaerolineaceae and Methanosaeta turned to be the dominant microorganisms in alkanes-dependent methanogenic culture after long-term of incubation. AMB Express, 5(1): 117
https://doi.org/10.1186/s13568-015-0117-4
pmid: 26080793
|
26 |
Lladó S, Jiménez N, Viñas M, Solanas A M (2009). Microbial populations related to PAH biodegradation in an aged biostimulated creosote-contaminated soil. Biodegradation, 20(5): 593–601
https://doi.org/10.1007/s10532-009-9247-1
pmid: 19153811
|
27 |
Luo J, Zhang J, Tan X, McDougald D, Zhuang G, Fane A G, Kjelleberg S, Cohen Y, Rice S A (2015). Characterization of the archaeal community fouling a membrane bioreactor. Journal of Environmental Sciences (China), 29: 115–123
https://doi.org/10.1016/j.jes.2014.07.025
pmid: 25766019
|
28 |
Musat F, Galushko A, Jacob J, Widdel F, Kube M, Reinhardt R, Wilkes H, Schink B, Rabus R (2009). Anaerobic degradation of naphthalene and 2-methylnaphthalene by strains of marine sulfate-reducing bacteria. Environmental Microbiology, 11(1): 209–219
https://doi.org/10.1111/j.1462-2920.2008.01756.x
pmid: 18811643
|
29 |
Pérez S, Guillamón M, Barceló D (2001). Quantitative analysis of polycyclic aromatic hydrocarbons in sewage sludge from wastewater treatment plants. Journal of Chromatography. A, 938(1-2): 57–65
https://doi.org/10.1016/S0021-9673(01)01338-3
pmid: 11771847
|
30 |
Pinyakong O, Tiangda K, Iwata K, Omori T (2012). Isolation of novel phenanthrene-degrading bacteria from seawater and the influence of its physical factors on the degradation of phenanthrene. Science Asia, 38(1): 36–43
https://doi.org/10.2306/scienceasia1513-1874.2012.38.036
|
31 |
Safinowski M, Meckenstock R U (2006). Methylation is the initial reaction in anaerobic naphthalene degradation by a sulfate-reducing enrichment culture. Environmental Microbiology, 8(2): 347–352
https://doi.org/10.1111/j.1462-2920.2005.00900.x
pmid: 16423020
|
32 |
Sekiguchi Y, Kamagata Y, Syutsubo K, Ohashi A, Harada H, Nakamura K (1998). Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis. Microbiology-Uk, 144(Pt 9): 2655–2665
https://doi.org/10.1099/00221287-144-9-2655
pmid: 9782515
|
33 |
Sullivan E R, Zhang X, Phelps C, Young L Y (2001). Anaerobic mineralization of stable-isotope-labeled 2-methylnaphthalene. Applied and Environmental Microbiology, 67(9): 4353–4357
https://doi.org/10.1128/AEM.67.9.4353-4357.2001
pmid: 11526046
|
34 |
Tøndervik A, Bruheim P, Berg L, Ellingsen T E, Kotlar H K, Valla S, Throne-Holst M (2012). Ralstonia sp. U2 naphthalene dioxygenase and Comamonas sp. JS765 nitrobenzene dioxygenase show differences in activity towards methylated naphthalenes. Journal of Bioscience and Bioengineering, 113(2): 173–178
https://doi.org/10.1016/j.jbiosc.2011.10.001
pmid: 22036075
|
35 |
Wan R, Zhang S, Xie S (2012). Microbial community changes in aquifer sediment microcosm for anaerobic anthracene biodegradation under methanogenic condition. Journal of Environmental Sciences (China), 24(8): 1498–1503
https://doi.org/10.1016/S1001-0742(11)60959-5
pmid: 23513693
|
36 |
Yarza P, Yilmaz P, Pruesse E, Glöckner F O, Ludwig W, Schleifer K H, Whitman W B, Euzéby J, Amann R, Rosselló-Móra R (2014). Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nature Reviews. Microbiology, 12(9): 635–645
https://doi.org/10.1038/nrmicro3330
pmid: 25118885
|
37 |
Ye Q, Zhang Z, Huang Y, Fang T, Cui Q, He C, Wang H (2018). Enhancing electron transfer by magnetite during phenanthrene anaerobic methanogenic degradation. International Biodeterioration & Biodegradation, 129: 109–116
https://doi.org/10.1016/j.ibiod.2018.01.012
|
38 |
Yin Q, Miao J, Li B, Wu G (2017). Enhancing electron transfer by ferroferric oxide during the anaerobic treatment of synthetic wastewater with mixed organic carbon. International Biodeterioration & Biodegradation, 119: 104–110
https://doi.org/10.1016/j.ibiod.2016.09.023
|
39 |
Yuan S Y, Chang B V (2007). Anaerobic degradation of five polycyclic aromatic hydrocarbons from river sediment in Taiwan. Journal of Environmental Science and Health. Part. B, Pesticides, Food Contaminants, and Agricultural Wastes, 42(1): 63–69
https://doi.org/10.1080/03601230601020860
pmid: 17162569
|
40 |
Zhang S, Wang Q, Xie S (2012a). Stable isotope probing identifies anthracene degraders under methanogenic conditions. Biodegradation, 23(2): 221–230
https://doi.org/10.1007/s10532-011-9501-1
pmid: 21805116
|
41 |
Zhang S Y, Wang Q F, Xie S G (2012b). Molecular characterization of phenanthrene-degrading methanogenic communities in leachate-contaminated aquifer sediment. International Journal of Environmental Science and Technology, 9(4): 705–712
https://doi.org/10.1007/s13762-012-0098-7
|
42 |
Zhang X, Young L Y (1997). Carboxylation as an initial reaction in the anaerobic metabolism of naphthalene and phenanthrene by sulfidogenic consortia. Applied and Environmental Microbiology, 63(12): 4759–4764
pmid: 9471963
|
43 |
Zhou S, Xu J, Yang G, Zhuang L (2014). Methanogenesis affected by the co-occurrence of iron(III) oxides and humic substances. FEMS Microbiology Ecology, 88(1): 107–120
https://doi.org/10.1111/1574-6941.12274
pmid: 24372096
|
44 |
Zhuang L, Tang J, Wang Y, Hu M, Zhou S (2015). Conductive iron oxide minerals accelerate syntrophic cooperation in methanogenic benzoate degradation. Journal of Hazardous Materials, 293: 37–45
https://doi.org/10.1016/j.jhazmat.2015.03.039
pmid: 25827267
|
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