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Emerging technology of in situ cell free expression protein microarrays |
Amita Nand1, Anju Gautam2, Javier Batista Pérez1, Alejandro Merino1, Jinsong Zhu1( ) |
| 1. National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing 100190, China; 2. Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China |
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Corresponding Author(s):
Zhu Jinsong,Email:jizhu88@gmail.com
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Issue Date: 01 February 2012
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| 1 |
Anderson, K.S., Sibani, S., Wallstrom, G., Qiu, J., Mendoza, E.A., Raphael, J., Hainsworth, E., Montor, W.R., Wong, J., Park, J.G., . (2011). Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer. J Proteome Res 10, 85-96 .
doi: 10.1021/pr100686b
|
| 2 |
Bundy, B.C., and Swartz, J.R. (2011). Efficient disulfide bond formation in virus-like particles. J Biotechnol 154, 230-239 .
doi: 10.1016/j.jbiotec.2011.04.011
|
| 3 |
Carlson, E.D., Gan, R., Hodgman, C.E., and Jewett, M.C. (2011). Cell-free protein synthesis: Applications come of age. Biotechnol Adv 2011 Oct 8 . [Epub ahead of print].
|
| 4 |
Chatterjee, D.K., Sitaraman, K., Baptista, C., Hartley, J., Hill, T.M.,and Munroe, D.J. (2008). Protein microarray on-demand: a novel protein microarray system. PLoS One 3 , e3265.
doi: 10.1371/journal.pone.0003265
|
| 5 |
Chatterjee, M., Mohapatra, S., Ionan, A., Bawa, G., Ali-Fehmi, R., Wang, X., Nowak, J., Ye, B., Nahhas, F.A., Lu, K., . (2006). Diagnostic markers of ovarian cancer by high-throughput antigen cloning and detection on arrays. Cancer Res 66 , 1181-1190 .
doi: 10.1158/0008-5472.CAN-04-2962
|
| 6 |
Ekins, R.P. (1989). Multi-analyte immunoassay. J Pharm Biomed Anal 7, 155-168 .
doi: 10.1016/0731-7085(89)80079-2
|
| 7 |
Endoh, T., Kanai, T., Sato, Y.T., Liu, D.V., Yoshikawa, K., Atomi, H., and Imanaka, T. (2006). Cell-free protein synthesis at high temperatures using the lysate of a hyperthermophile. J Biotechnol 126, 186-195 .
doi: 10.1016/j.jbiotec.2006.04.010
|
| 8 |
Feilner, T., Hultschig, C., Lee, J., Meyer, S., Immink, R.G., Koenig, A., Possling, A., Seitz, H., Beveridge, A., Scheel, D., . (2005). High throughput identification of potential Arabidopsis mitogenactivated protein kinases substrates. Mol Cell Proteomics 4, 1558-1568 .
doi: 10.1074/mcp.M500007-MCP200
|
| 9 |
Gygi, S.P., Rochon, Y., Franza, B.R., and Aebersold, R. (1999). Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19, 1720-1730 .
|
| 10 |
He, M., Stoevesandt, O., Palmer, E.A., Khan, F., Ericsson, O., and Taussig, M.J. (2008a). Printing protein arrays from DNA arrays. Nat Methods 5, 175-177 .
doi: 10.1038/nmeth.1178
|
| 11 |
He, M., Stoevesandt, O., and Taussig, M.J. (2008b). In situ synthesis of protein arrays. Curr Opin Biotechnol 19, 4-9 .
doi: 10.1016/j.copbio.2007.11.009
|
| 12 |
He, M., and Taussig, M.J. (2001). Single step generation of protein arrays from DNA by cell-free expression and in situ immobilisation (PISA method). Nucleic Acids Res 29, E73-E3 .
doi: 10.1093/nar/29.15.e73
|
| 13 |
Hickel, W., Kamp, D., and Knoll, W. (1989). Surface-plasmon microscopy. Nature 339, 186.
doi: 10.1038/339186a0
|
| 14 |
Hu, S., Vissink, A., Arellano, M., Roozendaal, C., Zhou, H., Kallenberg, C.G., and Wong, D.T. (2011). Identification of autoantibody biomarkers for primary Sj?gren’s syndrome using protein microarrays. Proteomics 11, 1499-1507 .
doi: 10.1002/pmic.201000206
|
| 15 |
J?r?s, K., and Anderson, K. (2011). Autoantibodies in cancer: prognostic biomarkers and immune activation. Expert Rev Proteomics 8, 577-589 .
doi: 10.1586/epr.11.48
|
| 16 |
Katzen, F., Chang, G., and Kudlicki, W. (2005). The past, present and future of cell-free protein synthesis. Trends Biotechnol 23, 150-156 .
doi: 10.1016/j.tibtech.2005.01.003
|
| 17 |
Kawahashi, Y., Doi, N., Takashima, H., Tsuda, C., Oishi, Y., Oyama, R., Yonezawa, M., Miyamoto-Sato, E., and Yanagawa, H. (2003). In vitro protein microarrays for detecting protein-protein interactions: application of a new method for fluorescence labeling of proteins. Proteomics 3, 1236-1243 .
doi: 10.1002/pmic.200300444
|
| 18 |
Kim, H.C., Kim, T.W., and Kim, D.M. (2011). Prolonged production of proteins in a cell-free protein synthesis system using polymeric carbohydrates as an energy source. Process Biochem 46, 1366-1369 .
doi: 10.1016/j.procbio.2011.03.008
|
| 19 |
Kralicek, A.V., Radjainia, M., Mohamad Ali, N.A., Carraher, C., Newcomb, R.D., and Mitra, A.K. (2011). A PCR-directed cell-free approach to optimize protein expression using diverse fusion tags. Protein Expr Purif 80, 117-124 .
doi: 10.1016/j.pep.2011.06.006
|
| 20 |
Langlais, C., Guilleaume, B., Wermke, N., Scheuermann, T., Ebert, L., LaBaer, J., and Korn, B. (2007). A systematic approach for testing expression of human full-length proteins in cell-free expression systems. BMC Biotechnol 7, 64.
doi: 10.1186/1472-6750-7-64
|
| 21 |
Lausted, C., Hu, Z., and Hood, L. (2008). Quantitative serum proteomics from surface plasmon resonance imaging. Mol Cell Proteomics 7, 2464-2474 .
doi: 10.1074/mcp.M800121-MCP200
|
| 22 |
Lueking, A., Cahill, D.J., and Müllner, S. (2005). Protein biochips: A new and versatile platform technology for molecular medicine. Drug Discov Today 10, 789-794 .
doi: 10.1016/S1359-6446(05)03449-5
|
| 23 |
Ma, H., He, J., Liu, X., Gan, J., Jin, G., and Zhou, J. (2010). Surface initiated polymerization from substrates of low initiator density and its applications in biosensors. ACS Appl Mater Interfaces 2, 3223-3230 .
doi: 10.1021/am1006832
|
| 24 |
Morley, M., Molony, C.M., Weber, T.M., Devlin, J.L., Ewens, K.G., Spielman, R.S., and Cheung, V.G. (2004). Genetic analysis of genome-wide variation in human gene expression. Nature 430, 743-747 .
doi: 10.1038/nature02797
|
| 25 |
Murthy, T.V., Wu, W., Qiu, Q.Q., Shi, Z., LaBaer, J., and Brizuela, L. (2004). Bacterial cell-free system for high-throughput protein expression and a comparative analysis of Escherichia coli cell-free and whole cell expression systems. Protein Expr Purif 36, 217-225 .
doi: 10.1016/j.pep.2004.04.002
|
| 26 |
Pease, A.C., Solas, D., Sullivan, E.J., Cronin, M.T., Holmes, C.P., and Fodor, S.P. (1994). Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proc Natl Acad Sci U S A 91, 5022-5026 .
doi: 10.1073/pnas.91.11.5022
|
| 27 |
Predki, P.F. (2004). Functional protein microarrays: ripe for discovery. Curr Opin Chem Biol 8, 8-13 .
doi: 10.1016/j.cbpa.2003.12.005
|
| 28 |
Ramachandran, N., Hainsworth, E., Bhullar, B., Eisenstein, S., Rosen, B., Lau, A.Y., Walter, J.C., and LaBaer, J. (2004). Self-assembling protein microarrays. Science 305, 86-90 .
doi: 10.1126/science.1097639
|
| 29 |
Ramachandran, N., Raphael, J.V., Hainsworth, E., Demirkan, G., Fuentes, M.G., Rolfs, A., Hu, Y., and LaBaer, J. (2008a). Nextgeneration high-density self-assembling functional protein arrays. Nat Methods 5, 535-538 .
doi: 10.1038/nmeth.1210
|
| 30 |
Ramachandran, N., Srivastava, S., and Labaer, J. (2008b). Applications of protein microarrays for biomarker discovery. Proteomics Clin Appl 2, 1444-1459 .
doi: 10.1002/prca.200800032
|
| 31 |
Ramani, S.R., Tom, I., Lewin-Koh, N., Wranik, B., Depalatis, L., Zhang, J., Eaton, D., and Gonzalez, L.C. (2012). A secreted protein microarray platform for extracellular protein interaction discovery. Anal Biochem 420, 127-138 .
|
| 32 |
Ro, H.S., Jung, S.O., Kho, B.H., Hong, H.P., Lee, J.S., Shin, Y.B., Kim, M.G., and Chung, B.H. (2005). Surface plasmon resonance imaging-based protein array chip system for monitoring a hexahistidine-tagged protein during expression and purification. Appl Environ Microbiol 71, 1089-1092 .
doi: 10.1128/AEM.71.2.1089-1092.2005
|
| 33 |
Siuti, P., Retterer, S.T., and Doktycz, M.J. (2011). Continuous protein production in nanoporous, picolitre volume containers. Lab Chip 11, 3523-3529 .
doi: 10.1039/c1lc20462a
|
| 34 |
Stevens, R.C. (2000). Design of high-throughput methods of protein production for structural biology. Structure 8, R177-R185 .
doi: 10.1016/S0969-2126(00)00193-3
|
| 35 |
Wang, X., Yu, J., Sreekumar, A., Varambally, S., Shen, R., Giacherio, D., Mehra, R., Montie, J.E., Pienta, K.J., Sanda, M.G., . (2005). Autoantibody signatures in prostate cancer. N Engl J Med 353, 1224-1235 .
doi: 10.1056/NEJMoa051931
|
| 36 |
Welsh, J.P., Bonomo, J., and Swartz, J.R. (2011). Localization of BiP to translating ribosomes increases soluble accumulation of secreted eukaryotic proteins in an Escherichia coli cell-free system. Biotechnol Bioeng 108, 1739-1748 .
doi: 10.1002/bit.23111
|
| 37 |
Zawada, J.F., Yin, G., Steiner, A.R., Yang, J., Naresh, A., Roy, S.M., Gold, D.S., Heinsohn, H.G., and Murray, C.J. (2011). Microscale to manufacturing scale-up of cell-free cytokine production—a new approach for shortening protein production development timelines. Biotechnol Bioeng 108, 1570-1578 .
doi: 10.1002/bit.23103
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