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Protein & Cell

ISSN 1674-800X

ISSN 1674-8018(Online)

CN 11-5886/Q

Postal Subscription Code 80-984

2018 Impact Factor: 7.575

Protein Cell    2019, Vol. 10 Issue (6) : 405-416    https://doi.org/10.1007/s13238-018-0578-8
RESEARCH ARTICLE
RNA binding protein 24 deletion disrupts global alternative splicing and causes dilated cardiomyopathy
Jing Liu1, Xu Kong1, Mengkai Zhang1, Xiao Yang2, Xiuqin Xu1()
1. The Institute of Stem Cell and Regenerative Medicine, Medical College, Xiamen University, Xiamen 361100, China
2. State Key Laboratory of Proteomics, Genetic Laboratory of Development and Disease, Institute of Biotechnology, Beijing 100071, China
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Abstract

RNA splicing contributes to a broad spectrum of posttranscriptional gene regulation during normal development, as well as pathological manifestation of heart diseases. However, the functional role and regulation of splicing in heart failure remain poorly understood. RNA binding protein (RBP), a major component of the splicing machinery, is a critical factor in this process. RNA binding motif protein 24 (RBM24) is a tissue-specific RBP which is highly expressed in human and mouse heart. Previous studies demonstrated the functional role of RBM24 in the embryonic heart development. However, the role of RBM24 in postnatal heart development and heart disease has not been investigated. In this paper, using conditional RBM24 knockout mice, we demonstrated that ablation of RBM24 in postnatal heart led to rapidly progressive dilated cardiomyopathy (DCM), heart failure, and postnatal lethality. Global splicing profiling revealed that RBM24 regulated a network of genes related to cardiac function and diseases. Knockout of RBM24 resulted in misregulation of these splicing transitions which contributed to the subsequent development of cardiomyopathy. Notably, our analysis identified RBM24 as a splice factor that determined the splicing switch of a subset of genes in the sacomeric Z-disc complex, including Titin, the major disease gene of DCM and heart failure. Together, this study identifies regulation of RNA splicing by RBM24 as a potent player in remodeling of heart during postnatal development, and provides novel mechanistic insights to the pathogenesis of DCM.

Keywords RNA binding protein      RBM24      dilated cardiomyopathy      alternative splicing      heart failure     
Corresponding Author(s): Xiuqin Xu   
Issue Date: 19 June 2019
 Cite this article:   
Jing Liu,Xu Kong,Mengkai Zhang, et al. RNA binding protein 24 deletion disrupts global alternative splicing and causes dilated cardiomyopathy[J]. Protein Cell, 2019, 10(6): 405-416.
 URL:  
https://academic.hep.com.cn/pac/EN/10.1007/s13238-018-0578-8
https://academic.hep.com.cn/pac/EN/Y2019/V10/I6/405
1 BR Anderson, HL Granzier (2012) Titin-based tension in the cardiac sarcomere: molecular origin and physiological adaptations. Prog Biophys Mol Biol 110(2–3):204–217
https://doi.org/10.1016/j.pbiomolbio.2012.08.003
2 T Arimura, R Takeya, T Ishikawa, T Yamano, A Matsuo, T Tatsumi, T Nomura, H Sumimoto, A Kimura (2013) Dilated cardiomyopathy-associated FHOD3 variant impairs the ability to induce activation of transcription factor serum response factor. Circ J 77(12):2990–2996
https://doi.org/10.1253/circj.CJ-13-0255
3 PM Benz, CJ Merkel, K Offner, M Abeßer, M Ullrich, T Fischer, B Bayer, H Wagner, S Gambaryan, JA Ursittiet al. (2013) Mena/VASP and alphaII-Spectrin complexes regulate cytoplasmic actin networks in cardiomyocytes and protect from conduction abnormalities and dilated cardiomyopathy. Cell Commun Signal 11:56
https://doi.org/10.1186/1478-811X-11-56
4 A Beqqali, IAE Bollen, TB Rasmussen, MM van den Hoogenhof, HWM van Deutekom, S Schafer, J Haas, B Meder, KE Sørensen, RJ van Oortet al. (2016) A mutation in the glutamate-rich region of RNA-binding motif protein 20 causes dilated cardiomyopathy through missplicing of titin and impaired Frank-Starling mechanism. Cardiovasc Res 112(1):452–463
https://doi.org/10.1093/cvr/cvw192
5 M Bienengraeber, TM Olson, VA Selivanov, EC Kathmann, F O’Cochlain, F Gao, AB Karger, JD Ballew, DM Hodgson, LV Zingmanet al. (2004) ABCC9 mutations identified in human dilated cardiomyopathy disrupt catalytic KATP channel gating. Nat Genet 36(4):382–387
https://doi.org/10.1038/ng1329
6 Y Blech-Hermoni, AN Ladd (2013) RNA binding proteins in the regulation of heart development. Int J Biochem Cell Biol 45(11):2467–2478
https://doi.org/10.1016/j.biocel.2013.08.008
7 G Cheng, M Takahashi, A Shunmugavel, JG Wallenborn, AA DePaoli-Roach, U Gergs, J Neumann, D Kuppuswamy, DR Menick, G Cooper (2010) Basis for MAP4 dephosphorylation-related microtubule network densification in pressure overload cardiac hypertrophy. J Biol Chem 285(49):38125–38140
https://doi.org/10.1074/jbc.M110.148650
8 TA Cooper (2005) Alternative splicing regulation impacts heart development. Cell 120(1):1–2
https://doi.org/10.1016/j.cell.2004.12.030
9 C Gao, S Ren, JH Lee, J Qiu, DJ Chapski, CD Rau, Y Zhou, M Abdellatif, A Nakano, TM Vondriskaet al. (2016) RBFox1-mediated RNA splicing regulates cardiac hypertrophy and heart failure. J Clin Invest 126(1):195–206
https://doi.org/10.1172/JCI84015
10 CC Gregorio, K Trombitás, T Centner, B Kolmerer, G Stier, K Kunke, K Suzuki, F Obermayr, B Herrmann, H Granzieret al. (1998) The NH2 terminus of titin spans the Z-disc: its interaction with a novel 19-kD ligand (T-cap) is required for sarcomeric integrity. J Cell Biol 143(4):1013–1027
https://doi.org/10.1083/jcb.143.4.1013
11 W Guo, S Schafer, ML Greaser, MH Radke, M Liss, T Govindarajan, H Maatz, H Schulz, S Li, AM Parrishet al. (2012) RBM20, a gene for hereditary cardiomyopathy, regulates titin splicing. Nat Med 18(5):766–773
https://doi.org/10.1038/nm.2693
12 M Hallegger, M Llorian, CW Smith (2010) Alternative splicing: global insights. FEBS J 277(4):856–866
https://doi.org/10.1111/j.1742-4658.2009.07521.x
13 A Kalsotra, TA Cooper (2011) Functional consequences of developmentally regulated alternative splicing. Nat Rev Genet 12(10):715–729
https://doi.org/10.1038/nrg3052
14 R Knöll, M Hoshijima, HM Hoffman, V Person, I Lorenzen-Schmidt, ML Bang, T Hayashi, N Shiga, H Yasukawa, W Schaperet al. (2002) The cardiac mechanical stretch sensor machinery involves a Z disc complex that is defective in a subset of human dilated cardiomyopathy. Cell 111(7):943–955
https://doi.org/10.1016/S0092-8674(02)01226-6
15 SW Kong, YW Hu, JW Ho, S Ikeda, S Polster, R John, JL Hall, E Bisping, B Pieske, CG dos Remedioset al. (2010) Heart failureassociated changes in RNA splicing of sarcomere genes. Circ Cardiovasc Genet 3(2):138–146
https://doi.org/10.1161/CIRCGENETICS.109.904698
16 E Lara-Pezzi, J Gómez-Salinero, A Gatto, P García-Pavía (2013) The alternative heart: impact of alternative splicing in heart disease. J Cardiovasc Transl Res 6(6):945–955
https://doi.org/10.1007/s12265-013-9482-z
17 KE LeMasters, Y Blech-Hermoni, SJ Stillwagon, NA Vajda, AN Ladd (2012) Loss of muscleblind-like 1 promotes invasive mesenchyme formation in endocardial cushions by stimulating autocrine TGFbeta3. BMC Dev Biol 12:22
https://doi.org/10.1186/1471-213X-12-22
18 Y Lin, KT Tan, J Liu, X Kong, Z Huang, XQ Xu (2017) Global profiling of Rbm24 bound RNAs uncovers a multi-tasking RNA binding protein. Int J Biochem Cell Biol 94:10–21
https://doi.org/10.1016/j.biocel.2017.11.002
19 J Liu, X Kong, YM Lee, MK Zhang, LY Guo, Y Lin, TK Lim, Q Lin, XQ Xu (2017a) Stk38 modulates Rbm24 protein stability to regulate sarcomere assembly in cardiomyocytes. Sci Rep 7:44870
https://doi.org/10.1038/srep46854
20 JS Liu, LL Fan, H Zhang, X Liu, H Huang, LJ Tao, K Xia, R Xiang (2017b) Whole-exome sequencing identifies two novel TTN mutations in Chinese families with dilated cardiomyopathy. Cardiology 136(1):10–14
https://doi.org/10.1159/000447422
21 JA Mayr, O Merkel, SD Kohlwein, BR Gebhardt, H Böhles, U Fötschl, J Koch, M Jaksch, H Lochmüller, R Horváthet al. (2007) Mitochondrial phosphate-carrier deficiency: a novel disorder of oxidative phosphorylation. Am J Hum Genet 80(3):478–484
https://doi.org/10.1086/511788
22 SB Ong, SB Kalkhoran, S Hernández-Reséndiz, P Samangouei, SG Ong, DJ Hausenloy (2017) Mitochondrial-shaping proteins in cardiac health and disease—the long and the short of it! Cardiovasc Drugs Ther 31(1):87–107
https://doi.org/10.1007/s10557-016-6710-1
23 KL Poon, KT Tan, YY Wei, CP Ng, A Colman, V Korzh, XQ Xu (2012) RNA-binding protein RBM24 is required for sarcomere assembly and heart contractility. Cardiovasc Res 94(3):418–427
https://doi.org/10.1093/cvr/cvs095
24 E Purevjav, J Varela, M Morgado, DL Kearney, H Li, MD Taylor, T Arimura, CL Moncman, W McKenna, RT Murphyet al. (2010) Nebulette mutations are associated with dilated cardiomyopathy and endocardial fibroelastosis. J Am Coll Cardiol 56(18):1493–1502
https://doi.org/10.1016/j.jacc.2010.05.045
25 D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, S Gueroussov, M Albu, H Zheng, A Yanget al. (2013) A compendium of RNA-binding motifs for decoding gene regulation. Nature 499(7457):172–177
https://doi.org/10.1038/nature12311
26 AM Roberts, JS Ware, DS Herman, S Schafer, J Baksi, AG Bick, RJ Buchan, R Walsh, S John, S Wilkinsonet al. (2015) Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease. Sci Transl Med 7(270):270–276
https://doi.org/10.1126/scitranslmed.3010134
27 U Tayal, S Prasad, SA Cook (2017) Genetics and genomics of dilated cardiomyopathy and systolic heart failure. Genome Med 9(1):20
https://doi.org/10.1186/s13073-017-0410-8
28 J Wang, N Xu, X Feng, N Hou, J Zhang, X Cheng, Y Chen, Y Zhang, X Yang (2005) Targeted disruption of Smad4 in cardiomyocytes results in cardiac hypertrophy and heart failure. Circ Res 97(8):821–828
https://doi.org/10.1161/01.RES.0000185833.42544.06
29 C Wei, J Qiu, Y Zhou, Y Xue, J Hu, K Ouyang, I Banerjee, C Zhang, B Chen, H Liet al. (2015) Repression of the central splicing regulator RBFox2 is functionally linked to pressure overloadinduced heart failure. Cell Rep 10:1521–1533
https://doi.org/10.1016/j.celrep.2015.02.013
30 RG Weintraub, C Semsarian, P Macdonald (2017) Dilated cardiomyopathy. Lancet 16:31713–31715
https://doi.org/10.1016/S0140-6736(16)31713-5
31 QS Wells, JR Becker, YR Su, JD Mosley, P Weeke, L D’Aoust, NL Ausborn, AH Ramirez, JP Pfotenhauer, AJ Naftilanet al. (2013) Whole exome sequencing identifies a causal RBM20 mutation in a large pedigree with familial dilated cardiomyopathy. Circ Cardiovasc Genet 6(4):317–326
https://doi.org/10.1161/CIRCGENETICS.113.000011
32 XQ Xu, SY Soo, W Sun, R Zweigerdt (2009) Global expression profile of highly enriched cardiomyocytes derived from human embryonic stem cells. Stem Cells 27(9):2163–2174
https://doi.org/10.1002/stem.166
33 XQ Xu, R Zweigerdt, XQ Xu, R Zweigerdt, SY Soo, ZX Ngoh, SC Tham, ST Wang, R Graichen, B Davidsonet al. (2008) Highly enriched cardiomyocytes from human embryonic stem cells. Cytotherapy 10(4):376–389
https://doi.org/10.1080/14653240802105307
34 J Yang, L-H Hung, T Licht, S Kostin, M Looso, E Khrameeva, A Bindereif, A Schneider, T Braun (2014) RBM24 is a major regulator of muscle-specific alternative splicing. Dev Cell 31(1):87–99
https://doi.org/10.1016/j.devcel.2014.08.025
35 T Zhang, Y Lin, J Liu, ZG Zhang, W Fu, LY Guo, L Pan, X Kong, MK Zhang, YH Luet al. (2016) Rbm24 regulates alternative splicing switch in embryonic stem cell cardiac lineage differentiation. Stem Cells 34(7):1776–1789
https://doi.org/10.1002/stem.2366
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