Bacterial and eukaryotic community interactions might contribute to shrimp culture pond soil ecosystem at different culture stages

doi:10.1007/s42832-021-0082-6

Soil Ecology Letters

2022, Vol. 4

Issue (2) : 119-130 https://doi.org/10.1007/s42832-021-0082-6

RESEARCH ARTICLE

Bacterial and eukaryotic community interactions might contribute to shrimp culture pond soil ecosystem at different culture stages

Renjun Zhou^1,², Hao Wang^1,², Dongdong Wei^1,², Shenzheng Zeng^1,², Dongwei Hou^1,², Shaoping Weng^1,², Jianguo He^1,²(

), Zhijian Huang^1,²(

)

¹. State Key Laboratory of Biocontrol, Southern Marine Sciences and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-sen University, Guangzhou 510275, China
². Institute of Aquatic Economic Animals and Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China

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Abstract

• Positive microbial interaction dominating in sedimentary bacterial and eukaryotic communities.

• Homogeneous selection process governed the assemblage of both bacterial and eukaryotic communities.

• Bacterial and eukaryotic diversities were in the reverse correlations with microbial positive interaction.

Sedimentary bacterial and eukaryotic communities are major components of the aquatic ecosystem. Revealing the linkages between their community structure and interactions is crucial to understand the diversity and functions of aquatic and soil ecosystems. However, how their diversity and assembly contribute to their interactions on time scale is unclear. This study examined sedimentary bacterial and eukaryotic communities in shrimp culture ponds at different culture stages. The most abundant bacteria were Proteobacteria (38.27%), whereas the most abundant eukaryotes were Chytridiomycota (27.48%). Bacterial and eukaryotic diversities were correlated (P<0.05), implying the strong interactions between bacteria and eukaryotes. Results showed that the bacterial and eukaryotic communities became increasingly similar on a local scale along with the shrimp culture. Only the eukaryotic community significantly increased in similarity along with the shrimp culture (P<0.05), suggesting that the sedimentary eukaryotic community structure is sensitive under shrimp culture. Co-occurrence network modeling indicated that positive microbial interactions were dominant. The homogeneous selection was the major driver of community assembly. Bacterial diversity negatively correlated with operational taxonomic units and positive links in networks (P<0.05), whereas eukaryotic diversities positively correlated with positive links in networks (P<0.05). This study broadens our knowledge about sedimentary microbial diversity, community assembly, and interaction patterns on time scale, providing a reference for the sustainable management in aquaculture production.

Keywords Sediment Shrimp culture Bacteria Eukaryotes Microbial community

Corresponding Author(s): Jianguo He,Zhijian Huang

Online First Date: 27 April 2021 Issue Date: 07 March 2022

Cite this article:

Renjun Zhou,Hao Wang,Dongdong Wei, et al. Bacterial and eukaryotic community interactions might contribute to shrimp culture pond soil ecosystem at different culture stages[J]. Soil Ecology Letters, 2022, 4(2): 119-130.

URL:

https://academic.hep.com.cn/sel/EN/10.1007/s42832-021-0082-6
https://academic.hep.com.cn/sel/EN/Y2022/V4/I2/119

Fig.1 OTU number and top taxonomic of bacterial and eukaryotic community OTUs. Common and stage-unique OTU numbers in (A) bacteria and (B) eukaryotes at different culture stages. Top phyla annotated from (C) bacterial community and (D) eukaryotic community.

Fig.2 Alpha-diversity of bacterial and eukaryotic communities at different culture stages. The column bar consists of mean±standard deviation (sd).

Tab.1 Spearman’s correlation between bacterial and eukaryotic diversities

Fig.3 Variations in sedimentary bacterial and eukaryotic communities at different shrimp culture stages. MNDS analyses of (A) bacterial communities and (B) eukaryotic communities at shrimp different culture stages. (C) Temporal distance decay analysis of bacterial and eukaryotic communities in shrimp culture. (D) Similarity analysis of bacterial and eukaryotic communities in different culture stages and central points. The deviation bar consists of mean±sd.

Fig.4 Network analyses of sedimentary microbial communities. (A) General co-occurrence network of microbial community. (B) Topological information of the microbial community co-occurrence network. Bacterial and eukaryotic OTUs are network nodes, black line means positive correlations, and red line means negative correlations.

Tab.2 Topological information of sedimentary microbial network analyses at different shrimp culture stages.

Fig.5 Community assemblage analysis of sedimentary bacterial and eukaryotic communities at different shrimp culture stages. (A) Bacterial community assembly and (B) eukaryotic community assembly at different shrimp culture stages. The column bar consists of mean±sd.

Fig.6 Spearman correlation between sedimentary microbial network nodes, edges, and community diversities (alpha- and beta-diversities), assembly processes respectively in shrimp culture stages. “Bac” means bacteria, “Euk” means eukaryotes. The Spearman correlation P-values are interpreted as star symbol, * means P<0.05, ** means P<0.01.

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