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Frontiers of Agricultural Science and Engineering

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Front. Agr. Sci. Eng.    2014, Vol. 1 Issue (1) : 21-27    https://doi.org/10.15302/J-FASE-2014002
REVIEW
Recent advances in fruit crop genomics
Qiang XU, Chaoyang LIU, Manosh Kumar BISWAS, Zhiyong PAN, Xiuxin DENG()
Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan 430070, China
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Abstract

In recent years, dramatic progress has been made in the genomics of fruit crops. The publication of a dozen fruit crop genomes represents a milestone for both functional genomics and breeding programs in fruit crops. Rapid advances in high-throughput sequencing technology have revolutionized the manner and scale of genomics in fruit crops. Research on fruit crops is encompassing a wide range of biological questions which are unique and cannot be addressed in a model plant such as Arabidopsis. This review summarizes recent achievements of research on the genome, transcriptome, proteome, miRNAs and epigenome of fruit crops.
Keywords fruit crops      fruit biology      gene function      genomics     
Corresponding Author(s): Xiuxin DENG   
Issue Date: 22 May 2014
 Cite this article:   
Qiang XU,Chaoyang LIU,Manosh Kumar BISWAS, et al. Recent advances in fruit crop genomics[J]. Front. Agr. Sci. Eng. , 2014, 1(1): 21-27.
 URL:  
https://academic.hep.com.cn/fase/EN/10.15302/J-FASE-2014002
https://academic.hep.com.cn/fase/EN/Y2014/V1/I1/21
Fig.1  Genomics studies in fruit crops and their potential roles for interested trait dissection, genetic modification and breeding
Species Common name Genome size/Mb Gene number TE1 percentage Reference
Carica papaya Papaya 372 24746 52.0 [2]
Citrus sinensis Sweet orange 367 29655 20.5 [3]
Fragaria vesca Strawberry 240 34809 22.0 [4]
Malus domestica Apple 742 57386 42.4 [5]
Musa acuminata Banana 523 36542 43.7 [6]
Phoenix dactylifera Date palm 658 25059 – [7]
Prunus persica Peach 265 27852 29.6 [8]
Pyrus bretschneideri Pear 527 42812 53.1 [9]
Actinidia chinensis Kiwifruit 758 39040 36.0 [10]
Vitis vinifera Grapevine 490 33514 41.4 [11]
Tab.1  Published de novo genomes of fruit crops
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