|
|
Dissection of gene function at clonal level using mosaic analysis with double markers |
Simon HIPPENMEYER() |
IST Austria (Institute of Science and Technology Austria), Am Campus 1, A-3400 Klosterneuburg, Austria |
|
|
Abstract MADM (Mosaic Analysis with Double Markers) technology offers a genetic approach in mice to visualize and concomitantly manipulate genetically defined cells at clonal level and single cell resolution. MADM employs Cre recombinase/loxP-dependent interchromosomal mitotic recombination to reconstitute two split marker genes—green GFP and red tdTomato — and can label sparse clones of homozygous mutant cells in one color and wild-type cells in the other color in an otherwise unlabeled background. At present, major MADM applications include lineage tracing, single cell labeling, conditional knockouts in small populations of cells and induction of uniparental chromosome disomy to assess effects of genomic imprinting. MADM can be applied universally in the mouse with the sole limitation being the specificity of the promoter controlling Cre recombinase expression. Here I review recent developments and extensions of the MADM technique and give an overview of the major discoveries and progresses enabled by the implementation of the novel genetic MADM tools.
|
Keywords
MADM
genetic mosaic
clonal analysis
lineage tracing
neural development
genomic imprinting
|
Corresponding Author(s):
HIPPENMEYER Simon,Email:simon.hippenmeyer@ist.ac.at
|
Issue Date: 01 December 2013
|
|
1 |
Armakolas A, Klar A J (2006). Cell type regulates selective segregation of mouse chromosome 7 DNA strands in mitosis. Science , 311(5764): 1146-1149 doi: 10.1126/science.1120519 pmid:16497932
|
2 |
Ayala R, Shu T, Tsai L H (2007). Trekking across the brain: the journey of neuronal migration. Cell , 128(1): 29-43 doi: 10.1016/j.cell.2006.12.021 pmid:17218253
|
3 |
Badea T C, Wang Y, Nathans J (2003). A noninvasive genetic/pharmacologic strategy for visualizing cell morphology and clonal relationships in the mouse. J Neurosci , 23(6): 2314-2322
|
4 |
Barlow D P (2011). Genomic imprinting: a mammalian epigenetic discovery model. Annu Rev Genet , 45(1): 379-403 doi: 10.1146/annurev-genet-110410-132459 pmid:21942369
|
5 |
Bartolomei M S, Ferguson-Smith A C (2011). Mammalian genomic imprinting. Cold Spring Harb Perspect Biol , 3(7): 3 doi: 10.1101/cshperspect.a002592 pmid:21576252
|
6 |
Bi W, Yan J, Stankiewicz P, Park S S, Walz K, Boerkoel C F, Potocki L, Shaffer L G, Devriendt K, Nowaczyk M J, Inoue K, Lupski J R (2002). Genes in a refined Smith-Magenis syndrome critical deletion interval on chromosome 17p11.2 and the syntenic region of the mouse. Genome Res , 12(5): 713-728 doi: 10.1101/gr.73702 pmid:11997338
|
7 |
Blair S S (2003). Genetic mosaic techniques for studying Drosophila development. Development , 130(21): 5065-5072 doi: 10.1242/dev.00774 pmid:12975340
|
8 |
Bonaguidi M A, Wheeler M A, Shapiro J S, Stadel R P, Sun G J, Ming G L, Song H (2011). In vivo clonal analysis reveals self-renewing and multipotent adult neural stem cell characteristics. Cell , 145(7): 1142-1155 doi: 10.1016/j.cell.2011.05.024 pmid:21664664
|
9 |
Branda C S, Dymecki S M (2004). Talking about a revolution: The impact of site-specific recombinases on genetic analyses in mice. Dev Cell , 6(1): 7-28 doi: 10.1016/S1534-5807(03)00399-X pmid:14723844
|
10 |
Brennand K, Huangfu D, Melton D (2007). All beta cells contribute equally to islet growth and maintenance. PLoS Biol , 5(7): e163 doi: 10.1371/journal.pbio.0050163 pmid:17535113
|
11 |
Buckingham M E, Meilhac S M (2011). Tracing cells for tracking cell lineage and clonal behavior. Dev Cell , 21(3): 394-409 doi: 10.1016/j.devcel.2011.07.019 pmid:21920310
|
12 |
Cajal S R y (1911). Histology of the Nervous System of Man and Vertebrates. Oxford University Press, Inc, Oxford 1995 Translation
|
13 |
Cepko C, Ryder E F, Austin C P, Walsh C, Fekete D M (1995). Lineage analysis using retrovirus vectors. Methods Enzymol , 254: 387-419 doi: 10.1016/0076-6879(95)54027-X pmid:8531701
|
14 |
Chow B Y, Han X, Boyden E S (2012). Genetically encoded molecular tools for light-driven silencing of targeted neurons. Prog Brain Res , 196: 49-61 doi: 10.1016/B978-0-444-59426-6.00003-3 pmid:22341320
|
15 |
Cowan W M (1998). The emergence of modern neuroanatomy and developmental neurobiology. Neuron , 20(3): 413-426 doi: 10.1016/S0896-6273(00)80985-X pmid:9539119
|
16 |
De Paola V, Arber S, Caroni P (2003). AMPA receptors regulate dynamic equilibrium of presynaptic terminals in mature hippocampal networks. Nat Neurosci , 6(5): 491-500 pmid:12692557
|
17 |
Desgraz R, Herrera P L (2009). Pancreatic neurogenin 3-expressing cells are unipotent islet precursors. Development , 136(21): 3567-3574 doi: 10.1242/dev.039214 pmid:19793886
|
18 |
Dessaud E, Yang L L, Hill K, Cox B, Ulloa F, Ribeiro A, Mynett A, Novitch B G, Briscoe J (2007). Interpretation of the sonic hedgehog morphogen gradient by a temporal adaptation mechanism. Nature , 450(7170): 717-720 doi: 10.1038/nature06347 pmid:18046410
|
19 |
Dymecki S M, Kim J C (2007). Molecular neuroanatomy’s “Three Gs”: a primer. Neuron , 54(1): 17-34 doi: 10.1016/j.neuron.2007.03.009 pmid:17408575
|
20 |
Espinosa J S, Luo L (2008). Timing neurogenesis and differentiation: insights from quantitative clonal analyses of cerebellar granule cells. J Neurosci , 28: 2301-2312
|
21 |
Espinosa J S, Wheeler D G, Tsien R W, Luo L (2009). Uncoupling dendrite growth and patterning: single-cell knockout analysis of NMDA receptor 2B. Neuron , 62(2): 205-217 doi: 10.1016/j.neuron.2009.03.006 pmid:19409266
|
22 |
Feil R, Brocard J, Mascrez B, LeMeur M, Metzger D, Chambon P (1996). Ligand-activated site-specific recombination in mice. Proc Natl Acad Sci USA , 93(20): 10887-10890 doi: 10.1073/pnas.93.20.10887 pmid:8855277
|
23 |
Feinberg A P (2007). Phenotypic plasticity and the epigenetics of human disease. Nature , 447(7143): 433-440 doi: 10.1038/nature05919 pmid:17522677
|
24 |
Feng G, Mellor R H, Bernstein M, Keller-Peck C, Nguyen Q T, Wallace M, Nerbonne J M, Lichtman J W, Sanes J R (2000). Imaging neuronal subsets in transgenic mice expressing multiple spectral variants of GFP. Neuron , 28(1): 41-51 doi: 10.1016/S0896-6273(00)00084-2 pmid:11086982
|
25 |
Foo L C, Allen N J, Bushong E A, Ventura P B, Chung W S, Zhou L, Cahoy J D, Daneman R, Zong H, Ellisman M H, Barres B A (2011). Development of a method for the purification and culture of rodent astrocytes. Neuron , 71(5): 799-811 doi: 10.1016/j.neuron.2011.07.022 pmid:21903074
|
26 |
Franco S J, Müller U (2013). Shaping our minds: stem and progenitor cell diversity in the mammalian neocortex. Neuron , 77(1): 19-34 doi: 10.1016/j.neuron.2012.12.022 pmid:23312513
|
27 |
Gao P, Sultan K T, Zhang X J, Shi S H (2013). Lineage-dependent circuit assembly in the neocortex. Development , 140(13): 2645-2655 doi: 10.1242/dev.087668 pmid:23757410
|
28 |
Gorski J A, Talley T, Qiu M, Puelles L, Rubenstein J L, Jones K R (2002). Cortical excitatory neurons and glia, but not GABAergic neurons, are produced in the Emx1-expressing lineage. J Neurosci , 22: 6309-6314
|
29 |
Hallonet M E, Le Douarin N M (1993). Tracing neuroepithelial cells of the mesencephalic and metencephalic alar plates during cerebellar ontogeny in quail-chick chimaeras. Eur J Neurosci , 5(9): 1145-1155 doi: 10.1111/j.1460-9568.1993.tb00969.x pmid:8281319
|
30 |
Hayashi S, McMahon A P (2002). Efficient recombination in diverse tissues by a tamoxifen-inducible form of Cre: a tool for temporally regulated gene activation/inactivation in the mouse. Dev Biol , 244(2): 305-318 doi: 10.1006/dbio.2002.0597 pmid:11944939
|
31 |
Hegemann P, M?glich A (2011). Channelrhodopsin engineering and exploration of new optogenetic tools. Nat Methods , 8(1): 39-42 doi: 10.1038/nmeth.f.327 pmid:21191371
|
32 |
Hippenmeyer S, Johnson R L, Luo L (2013). Mosaic analysis with double markers reveals cell-type-specific paternal growth dominance. Cell Rep , 3: 960-967
|
33 |
Hippenmeyer S, Vrieseling E, Sigrist M, Portmann T, Laengle C, Ladle D R, Arber S (2005). A developmental switch in the response of DRG neurons to ETS transcription factor signaling. PLoS Biol , 3(5): e159 doi: 10.1371/journal.pbio.0030159 pmid:15836427
|
34 |
Hippenmeyer S, Youn Y H, Moon H M, Miyamichi K, Zong H, Wynshaw-Boris A, Luo L (2010). Genetic mosaic dissection of Lis1 and Ndel1 in neuronal migration. Neuron , 68(4): 695-709 doi: 10.1016/j.neuron.2010.09.027 pmid:21092859
|
35 |
Imayoshi I, Ohtsuka T, Metzger D, Chambon P, Kageyama R (2006). Temporal regulation of Cre recombinase activity in neural stem cells. Genesis , 44(5): 233-238 doi: 10.1002/dvg.20212 pmid:16652364
|
36 |
Indra A K, Warot X, Brocard J, Bornert J M, Xiao J H, Chambon P, Metzger D (1999). Temporally-controlled site-specific mutagenesis in the basal layer of the epidermis: comparison of the recombinase activity of the tamoxifen-inducible Cre-ER(T) and Cre-ER(T2) recombinases. Nucleic Acids Res , 27(22): 4324-4327 doi: 10.1093/nar/27.22.4324 pmid:10536138
|
37 |
Jefferis G S, Livet J (2012). Sparse and combinatorial neuron labelling. Curr Opin Neurobiol , 22(1): 101-110 doi: 10.1016/j.conb.2011.09.010 pmid:22030345
|
38 |
Lao Z, Raju G P, Bai C B, Joyner A L (2012). MASTR: a technique for mosaic mutant analysis with spatial and temporal control of recombination using conditional floxed alleles in mice. Cell Rep , 2: 386-396
|
39 |
Lee T, Luo L (1999). Mosaic analysis with a repressible cell marker for studies of gene function in neuronal morphogenesis. Neuron , 22(3): 451-461 doi: 10.1016/S0896-6273(00)80701-1 pmid:10197526
|
40 |
Legué E, Joyner A L (2010). Genetic fate mapping using site-specific recombinases. Methods Enzymol , 477: 153-181 doi: 10.1016/S0076-6879(10)77010-5 pmid:20699142
|
41 |
Lehtinen M K, Walsh C A (2011). Neurogenesis at the brain-cerebrospinal fluid interface. Annu Rev Cell Dev Biol , 27(1): 653-679 doi: 10.1146/annurev-cellbio-092910-154026 pmid:21801012
|
42 |
Lewandoski M (2001). Conditional control of gene expression in the mouse. Nat Rev Genet , 2(10): 743-755 doi: 10.1038/35093537 pmid:11584291
|
43 |
Liang H, Xiao G, Yin H, Hippenmeyer S, Horowitz J M, Ghashghaei H T (2013). Neural development is dependent on the function of specificity protein 2 in cell cycle progression. Development , 140(3): 552-561 doi: 10.1242/dev.085621 pmid:23293287
|
44 |
Liu C, Sage J C, Miller M R, Verhaak R G, Hippenmeyer S, Vogel H, Foreman O, Bronson R T, Nishiyama A, Luo L, Zong H (2011). Mosaic analysis with double markers reveals tumor cell of origin in glioma. Cell , 146(2): 209-221 doi: 10.1016/j.cell.2011.06.014 pmid:21737130
|
45 |
Liu P, Jenkins N A, Copeland N G (2002). Efficient Cre-loxP-induced mitotic recombination in mouse embryonic stem cells. Nat Genet , 30(1): 66-72 doi: 10.1038/ng788 pmid:11740496
|
46 |
Lui J H, Hansen D V, Kriegstein A R (2011). Development and evolution of the human neocortex. Cell , 146(1): 18-36 doi: 10.1016/j.cell.2011.06.030 pmid:21729779
|
47 |
Luo L (2007). Fly MARCM and mouse MADM: genetic methods of labeling and manipulating single neurons. Brain Res Brain Res Rev , 55(2): 220-227 doi: 10.1016/j.brainresrev.2007.01.012 pmid:17408568
|
48 |
Mabb A M, Judson M C, Zylka M J, Philpot B D (2011). Angelman syndrome: insights into genomic imprinting and neurodevelopmental phenotypes. Trends Neurosci , 34(6): 293-303 doi: 10.1016/j.tins.2011.04.001 pmid:21592595
|
49 |
Madisen L, Zwingman T A, Sunkin S M, Oh S W, Zariwala H A, Gu H, Ng L L, Palmiter R D, Hawrylycz M J, Jones A R, Lein E S, Zeng H (2010). A robust and high-throughput Cre reporting and characterization system for the whole mouse brain. Nat Neurosci , 13(1): 133-140 doi: 10.1038/nn.2467 pmid:20023653
|
50 |
Marín O, Valiente M, Ge X, Tsai L H (2010). Guiding neuronal cell migrations. Cold Spring Harb Perspect Biol , 2(2): a001834 doi: 10.1101/cshperspect.a001834 pmid:20182622
|
51 |
McConnell S K (1988). Fates of visual cortical neurons in the ferret after isochronic and heterochronic transplantation. J Neurosci , 8: 945-974
|
52 |
Merkle F T, Mirzadeh Z, Alvarez-Buylla A (2007). Mosaic organization of neural stem cells in the adult brain. Science , 317(5836): 381-384 doi: 10.1126/science.1144914 pmid:17615304
|
53 |
Metzger D, Chambon P (2001). Site- and time-specific gene targeting in the mouse. Methods , 24(1): 71-80 doi: 10.1006/meth.2001.1159 pmid:11327805
|
54 |
Ming G L, Song H (2011). Adult neurogenesis in the mammalian brain: significant answers and significant questions. Neuron , 70(4): 687-702 doi: 10.1016/j.neuron.2011.05.001 pmid:21609825
|
55 |
Miyoshi G, Hjerling-Leffler J, Karayannis T, Sousa V H, Butt S J, Battiste J, Johnson J E, Machold R P, Fishell G (2010). Genetic fate mapping reveals that the caudal ganglionic eminence produces a large and diverse population of superficial cortical interneurons. J Neurosci , 30: 1582-1594
|
56 |
Morgan T H (1914). Mosaics and gynandromorphs in Drosophila. Proc Soc Exp Biol Med , 11(6): 171-172 doi: 10.3181/00379727-11-105
|
57 |
Muzumdar M D, Luo L, Zong H (2007). Modeling sporadic loss of heterozygosity in mice by using mosaic analysis with double markers (MADM). Proc Natl Acad Sci USA , 104(11): 4495-4500 doi: 10.1073/pnas.0606491104 pmid:17360552
|
58 |
Nelson S B, Sugino K, Hempel C M (2006). The problem of neuronal cell types: a physiological genomics approach. Trends Neurosci , 29(6): 339-345 doi: 10.1016/j.tins.2006.05.004 pmid:16714064
|
59 |
Nicholls R D, Knepper J L (2001). Genome organization, function, and imprinting in Prader-Willi and Angelman syndromes. Annu Rev Genomics Hum Genet , 2(1): 153-175 doi: 10.1146/annurev.genom.2.1.153 pmid:11701647
|
60 |
Ninkovic J, Gotz M (2013). Fate specification in the adult brain-lessons for eliciting neurogenesis from glial cells. BioEssays , 35: 242-252
|
61 |
Novak A, Guo C, Yang W, Nagy A, Lobe C G (2000). Z/EG, a double reporter mouse line that expresses enhanced green fluorescent protein upon Cre-mediated excision. Genesis , 28(3-4): 147-155 doi: 10.1002/1526-968X(200011/12)28:3/4<147::AID-GENE90>3.0.CO;2-G pmid:11105057
|
62 |
Petersen P H, Zou K, Hwang J K, Jan Y N, Zhong W (2002). Progenitor cell maintenance requires numb and numblike during mouse neurogenesis. Nature , 419(6910): 929-934 doi: 10.1038/nature01124 pmid:12410312
|
63 |
Reiner O, Carrozzo R, Shen Y, Wehnert M, Faustinella F, Dobyns W B, Caskey C T, Ledbetter D H (1993). Isolation of a Miller-Dieker lissencephaly gene containing G protein beta-subunit-like repeats. Nature , 364(6439): 717-721 doi: 10.1038/364717a0 pmid:8355785
|
64 |
Ross M E, Walsh C A (2001). Human brain malformations and their lessons for neuronal migration. Annu Rev Neurosci , 24(1): 1041-1070 doi: 10.1146/annurev.neuro.24.1.1041 pmid:11520927
|
65 |
Sanes J R (1989). Analysing cell lineage with a recombinant retrovirus. Trends Neurosci , 12(1): 21-28 doi: 10.1016/0166-2236(89)90152-5 pmid:2471334
|
66 |
Schnütgen F, Doerflinger N, Calléja C, Wendling O, Chambon P, Ghyselinck N B (2003). A directional strategy for monitoring Cre-mediated recombination at the cellular level in the mouse. Nat Biotechnol , 21(5): 562-565 doi: 10.1038/nbt811 pmid:12665802
|
67 |
Shaner N C, Campbell R E, Steinbach P A, Giepmans B N, Palmer A E, Tsien R Y (2004). Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat Biotechnol , 22(12): 1567-1572 doi: 10.1038/nbt1037 pmid:15558047
|
68 |
Smith G B, Fitzpatrick D (2012). Specifying cortical circuits: a role for cell lineage. Neuron , 75(1): 4-5 doi: 10.1016/j.neuron.2012.06.032 pmid:22794254
|
69 |
Soriano P (1999). Generalized lacZ expression with the ROSA26 Cre reporter strain. Nat Genet , 21(1): 70-71 doi: 10.1038/5007 pmid:9916792
|
70 |
Stern C (1936). Somatic Crossing over and Segregation in Drosophila Melanogaster. Genetics , 21(6): 625-730 pmid:17246815
|
71 |
Tasic B, Miyamichi K, Hippenmeyer S, Dani V S, Zeng H, Joo W, Zong H, Chen-Tsai Y, Luo L (2012). Extensions of MADM (mosaic analysis with double markers) in mice. PLoS ONE , 7(3): e33332 doi: 10.1371/journal.pone.0033332 pmid:22479386
|
72 |
Tronche F, Kellendonk C, Kretz O, Gass P, Anlag K, Orban P C, Bock R, Klein R, Schütz G (1999). Disruption of the glucocorticoid receptor gene in the nervous system results in reduced anxiety. Nat Genet , 23(1): 99-103 doi: 10.1038/12703 pmid:10471508
|
73 |
Tsai J W, Chen Y, Kriegstein A R, Vallee R B (2005). LIS1 RNA interference blocks neural stem cell division, morphogenesis, and motility at multiple stages. J Cell Biol , 170(6): 935-945 doi: 10.1083/jcb.200505166 pmid:16144905
|
74 |
Walsh C, Cepko C L (1992). Widespread dispersion of neuronal clones across functional regions of the cerebral cortex. Science , 255(5043): 434-440 doi: 1734520" target="_blank">10.1126/science. pmid:1734520 pmid:1734520
|
75 |
Wingate R J, Hatten M E (1999). The role of the rhombic lip in avian cerebellum development. Development , 126(20): 4395-4404 pmid:10498676
|
76 |
Woodruff A, Xu Q, Anderson S A, Yuste R (2009). Depolarizing effect of neocortical chandelier neurons. Front Neural Circuits 3: 15.
|
77 |
Wynshaw-Boris A, Pramparo T, Youn Y H, Hirotsune S (2010). Lissencephaly: mechanistic insights from animal models and potential therapeutic strategies. Semin Cell Dev Biol , 21(8): 823-830 doi: 10.1016/j.semcdb.2010.07.008 pmid:20688183
|
78 |
Xu Q, Tam M, Anderson S A (2008). Fate mapping Nkx2.1-lineage cells in the mouse telencephalon. J Comp Neurol , 506(1): 16-29 doi: 10.1002/cne.21529 pmid:17990269
|
79 |
Xu T, Rubin G M (1993). Analysis of genetic mosaics in developing and adult Drosophila tissues. Development , 117(4): 1223-1237 pmid:8404527
|
80 |
Yang S B, Mclemore K D, Tasic B, Luo L, Jan Y N, Jan L Y (2012). Kv1.1-dependent control of hippocampal neuron number as revealed by mosaic analysis with double markers. J Physiol , 590(Pt 11): 2645-2658 pmid:22411008
|
81 |
Yingling J, Toyo-Oka K, Wynshaw-Boris A (2003). Miller-Dieker syndrome: analysis of a human contiguous gene syndrome in the mouse. Am J Hum Genet , 73(3): 475-488 doi: 10.1086/378096 pmid:12905154
|
82 |
Yingling J, Youn Y H, Darling D, Toyo-Oka K, Pramparo T, Hirotsune S, Wynshaw-Boris A (2008). Neuroepithelial stem cell proliferation requires LIS1 for precise spindle orientation and symmetric division. Cell , 132(3): 474-486 doi: 10.1016/j.cell.2008.01.026 pmid:18267077
|
83 |
Youn Y H, Pramparo T, Hirotsune S, Wynshaw-Boris A (2009). Distinct dose-dependent cortical neuronal migration and neurite extension defects in Lis1 and Ndel1 mutant mice. J Neurosci , 29: 15520-15530
|
84 |
Young P, Qiu L, Wang D, Zhao S, Gross J, Feng G (2008). Single-neuron labeling with inducible Cre-mediated knockout in transgenic mice. Nat Neurosci , 11(6): 721-728 doi: 10.1038/nn.2118 pmid:18454144
|
85 |
Zhang F, Aravanis A M, Adamantidis A, de Lecea L, Deisseroth K (2007). Circuit-breakers: optical technologies for probing neural signals and systems. Nat Rev Neurosci , 8(8): 577-581 doi: 10.1038/nrn2192 pmid:17643087
|
86 |
Zhu X, Bergles D E, Nishiyama A (2008). NG2 cells generate both oligodendrocytes and gray matter astrocytes. Development , 135(1): 145-157 doi: 10.1242/dev.004895 pmid:18045844
|
87 |
Zhuo L, Theis M, Alvarez-Maya I, Brenner M, Willecke K, Messing A (2001). hGFAP-cre transgenic mice for manipulation of glial and neuronal function in vivo. Genesis , 31(2): 85-94 doi: 10.1002/gene.10008 pmid:11668683
|
88 |
Zong H, Espinosa J S, Su H H, Muzumdar M D, Luo L (2005). Mosaic analysis with double markers in mice. Cell , 121(3): 479-492 doi: 10.1016/j.cell.2005.02.012 pmid:15882628
|
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
|
Shared |
|
|
|
|
|
Discussed |
|
|
|
|