Please wait a minute...
Protein & Cell

ISSN 1674-800X

ISSN 1674-8018(Online)

CN 11-5886/Q

Postal Subscription Code 80-984

2018 Impact Factor: 7.575

Protein Cell    2010, Vol. 1 Issue (3) : 275-283    https://doi.org/10.1007/s13238-010-0030-1      PMID: 21203974
Research articles
SUMOylation of RIG-I positively regulates the type I interferon signaling
Zhiqiang Mi1,Jihuan Fu2,Yanbao Xiong2,Hong Tang2,
1.Center for Molecular Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China;Key Laboratory of Infection and Immunity of Chinese Academy of Sciences, Institute of Biophysics, Beijing 100101, China; 2.Key Laboratory of Infection and Immunity of Chinese Academy of Sciences, Institute of Biophysics, Beijing 100101, China;
 Download: PDF(276 KB)  
 Export: BibTeX | EndNote | Reference Manager | ProCite | RefWorks
Abstract Retinoic acid-inducible gene-I (RIG-I) functions as an intracellular pattern recognition receptor (PRR) that recognizes the 5’-triphosphate moiety of single-stranded RNA viruses to initiate the innate immune response. Previous studies have shown that Lys63-linked ubiquitylation is required for RIG-I activation and the downstream anti-viral type I interferon (IFN-I) induction. Herein we reported that, RIG-I was also modified by small ubiquitin-like modifier-1 (SUMO-1). Functional analysis showed that RIG-I SUMOylation enhanced IFN-I production through increased ubiquitylation and the interaction with its downstream adaptor molecule Cardif. Our results therefore suggested that SUMOylation might serve as an additional regulatory tier for RIG-I activation and IFN-I signaling.
Keywords RIG-I      SUMOylation      type I interferon      innate immunity      
Issue Date: 01 March 2010
 Cite this article:   
Zhiqiang Mi,Yanbao Xiong,Jihuan Fu, et al. SUMOylation of RIG-I positively regulates the type I interferon signaling[J]. Protein Cell, 2010, 1(3): 275-283.
 URL:  
https://academic.hep.com.cn/pac/EN/10.1007/s13238-010-0030-1
https://academic.hep.com.cn/pac/EN/Y2010/V1/I3/275
Anckar, J., and Sistonen, L. (2007). SUMO: getting it on. BiochemSoc Trans35, 1409―1413.

doi: 10.1042/BST0351409
Arimoto, K., Konishi, H., and Shimotohno, K. (2008). UbcH8regulates ubiquitin and ISG15 conjugation to RIG-I. Mol Immunol45, 1078―1084.

doi: 10.1016/j.molimm.2007.07.021
Arimoto, K., Takahashi, H., Hishiki, T., Konishi, H., Fujita, T., and Shimotohno, K. (2007). Negativeregulation of the RIG-I signaling by the ubiquitin ligase RNF125. Proc Natl Acad Sci U S A104, 7500―7505.

doi: 10.1073/pnas.0611551104
Boggio, R., Colombo, R., Hay, R.T., Draetta, G.F., and Chiocca, S. (2004). A mechanism for inhibiting the SUMO pathway. Mol Cell16, 549―561.

doi: 10.1016/j.molcel.2004.11.007
Comerford, K.M., Leonard, M.O., Karhausen, J., Carey, R., Colgan, S.P., and Taylor, C.T. (2003). Smallubiquitin-related modifier-1 modification mediates resolution of CREB-dependentresponses to hypoxia. Proc Natl Acad SciU S A100, 986―991.

doi: 10.1073/pnas.0337412100
Cui, X.F., Imaizumi, T., Yoshida, H., Borden, E.C., and Satoh, K. (2004). Retinoic acid-inducible gene-I is induced by interferon-gammaand regulates the expression of interferon-gamma stimulated gene 15in MCF-7 cells. Biochem Cell Biol82, 401―405.

doi: 10.1139/o04-041
Desterro, J.M., Rodriguez, M.S., and Hay, R.T. (1998). SUMO-1modification of IkappaBalpha inhibits NF-kappaB activation. Mol Cell2, 233―239.

doi: 10.1016/S1097-2765(00)80133-1
Desterro, J.M., Thomson, J., and Hay, R.T. (1997). Ubch9conjugates SUMO but not ubiquitin. FEBSLett417, 297―300.

doi: 10.1016/S0014-5793(97)01305-7
Doyle, S., Vaidya, S., O'Connell, R., Dadgostar, H., Dempsey, P., Wu, T., Rao, G., Sun, R., Haberland, M., Modlin, R., et al. (2002). IRF3 mediates a TLR3/TLR4-specificantiviral gene program. Immunity17, 251―263.

doi: 10.1016/S1074-7613(02)00390-4
Gack, M.U., Shin, Y.C., Joo, C.H., Urano, T., Liang, C., Sun, L., Takeuchi, O., Akira, S., Chen, Z., Inoue, S., et al. (2007). TRIM25 RING-finger E3 ubiquitin ligase isessential for RIG-I-mediated antiviral activity. Nature446, 916―920.

doi: 10.1038/nature05732
Geiss-Friedlander, R., and Melchior, F. (2007). Concepts in sumoylation: a decade on. Nat Rev Mol Cell Biol8, 947―956.

doi: 10.1038/nrm2293
Gitlin, L., Barchet, W., Gilfillan, S., Cella, M., Beutler, B., Flavell, R.A., Diamond, M.S., and Colonna, M. (2006). Essential role of mda-5 in type I IFN responses to polyriboinosinic:polyribocytidylicacid and encephalomyocarditis picornavirus. Proc Natl Acad Sci U S A103, 8459―8464.

doi: 10.1073/pnas.0603082103
Guo, B., and Cheng, G. (2007). Modulation of the interferon antiviral response by theTBK1/IKKi adaptor protein TANK. J BiolChem282, 11817―11826.

doi: 10.1074/jbc.M700017200
Guo, D., Li, M., Zhang, Y., Yang, P., Eckenrode, S., Hopkins, D., Zheng, W., Purohit, S., Podolsky, R.H., Muir, A., et al. (2004). A functional variant of SUMO4, a new I kappa B alphamodifier, is associated with type 1 diabetes. Nat Genet36, 837―841.

doi: 10.1038/ng1391
Han, K.J., Jiang, L., and Shu, H.B. (2008). Regulationof IRF2 transcriptional activity by its sumoylation. Biochem Biophys Res Commun372, 772―778.

doi: 10.1016/j.bbrc.2008.05.103
Hay, R.T. (2005). SUMO: a history of modification. Mol Cell18, 1―12.

doi: 10.1016/j.molcel.2005.03.012
Hershko, A., and Ciechanover, A. (1998). The ubiquitin system. AnnuRev Biochem67, 425―479.

doi: 10.1146/annurev.biochem.67.1.425
Hornung, V., Ellegast, J., Kim, S., Brzozka, K., Jung, A., Kato, H., Poeck, H., Akira, S., Conzelmann, K.K., Schlee, M., et al. (2006). 5'-Triphosphate RNA is the ligand for RIG-I. Science314, 994―997.

doi: 10.1126/science.1132505
Huang, T.T., Wuerzberger-Davis, S.M., Wu, Z.H., and Miyamoto, S. (2003). Sequential modificationof NEMO/IKKgamma by SUMO-1 and ubiquitin mediates NF-kappaB activationby genotoxic stress. Cell115, 565―576.

doi: 10.1016/S0092-8674(03)00895-X
Imaizumi, T., Hatakeyama, M., Yamashita, K., Yoshida, H., Ishikawa, A., Taima, K., Satoh, K., Mori, F., and Wakabayashi, K. (2004). Interferon-gammainduces retinoic acid-inducible gene-I in endothelial cells. Endothelium11, 169―173.

doi: 10.1080/10623320490512156
Jounai, N., Takeshita, F., Kobiyama, K., Sawano, A., Miyawaki, A., Xin, K.Q., Ishii, K.J., Kawai, T., Akira, S., Suzuki, K., et al. (2007). The Atg5 Atg12 conjugateassociates with innate antiviral immune responses. Proc Natl Acad Sci U S A104, 14050―14055.

doi: 10.1073/pnas.0704014104
Kang, D.C., Gopalkrishnan, R.V., Lin, L., Randolph, A., Valerie, K., Pestka, S., and Fisher, P.B. (2004). Expression analysisand genomic characterization of human melanoma differentiation associatedgene-5, mda-5: a novel type I interferon-responsive apoptosis-inducinggene. Oncogene23, 1789―1800.

doi: 10.1038/sj.onc.1207300
Kang, D.C., Gopalkrishnan, R.V., Wu, Q., Jankowsky, E., Pyle, A.M., and Fisher, P.B. (2002). mda-5:An interferon-inducible putative RNA helicase with double-strandedRNA-dependent ATPase activity and melanoma growth-suppressive properties. Proc Natl Acad Sci U S A99, 637―642.

doi: 10.1073/pnas.022637199
Kato, H., Sato, S., Yoneyama, M., Yamamoto, M., Uematsu, S., Matsui, K., Tsujimura, T., Takeda, K., Fujita, T., Takeuchi, O., et al. (2005). Cell type-specific involvementof RIG-I in antiviral response. Immunity23, 19―28.

doi: 10.1016/j.immuni.2005.04.010
Kato, H., Takeuchi, O., Sato, S., Yoneyama, M., Yamamoto, M., Matsui, K., Uematsu, S., Jung, A., Kawai, T., Ishii, K.J., et al.(2006). Differential roles of MDA5 and RIG-Ihelicases in the recognition of RNA viruses. Nature441, 101―105.

doi: 10.1038/nature04734
Kawai, T., Takahashi, K., Sato, S., Coban, C., Kumar, H., Kato, H., Ishii, K.J., Takeuchi, O., and Akira, S. (2005). IPS-1,an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction. Nat Immunol6, 981―988.

doi: 10.1038/ni1243
Kim, M.J., Hwang, S.Y., Imaizumi, T., and Yoo, J.Y. (2008). Negative feedbackregulation of RIG-I-mediated antiviral signaling by interferon-inducedISG15 conjugation. J Virol82, 1474―1483.

doi: 10.1128/JVI.01650-07
Kubota, T., Matsuoka, M., Chang, T.H., Tailor, P., Sasaki, T., Tashiro, M., Kato, A., and Ozato, K. (2008). Virus infection triggers SUMOylation of IRF3 and IRF7,leading to the negative regulation of type I interferon gene expression. J Biol Chem283, 25660―25670.

doi: 10.1074/jbc.M804479200
Lenz, H.J., Danenberg, K., Schnieders, B., Goeker, E., Peters, G.J., Garrow, T., Shane, B., Bertino, J.R., and Danenberg, P.V. (1994). Quantitativeanalysis of folylpolyglutamate synthetase gene expression in tumortissues by the polymerase chain reaction: marked variation of expressionamong leukemia patients. Oncol Res6, 329―335.
Lim, K.L., Chew, K.C., Tan, J.M., Wang, C., Chung, K.K., Zhang, Y., Tanaka, Y., Smith, W., Engelender, S., Ross, C.A., et al. (2005). Parkin mediates nonclassical, proteasomal-independentubiquitination of synphilin-1: implications for Lewy body formation. J Neurosci25, 2002―2009.

doi: 10.1523/JNEUROSCI.4474-04.2005
Lin, R., Yang, L., Nakhaei, P., Sun, Q., Sharif-Askari, E., Julkunen, I., and Hiscott, J. (2006). Negative regulation of the retinoic acid-inducible geneI-induced antiviral state by the ubiquitin-editing protein A20. J Biol Chem281, 2095―2103.

doi: 10.1074/jbc.M510326200
Lin, X., Liang, M., Liang, Y.Y., Brunicardi, F.C., and Feng, X.H. (2003). SUMO-1/Ubc9 promotes nuclear accumulation and metabolicstability of tumor suppressor Smad4. JBiol Chem278, 31043―31048.

doi: 10.1074/jbc.C300112200
Mattana, P., and Viscomi, G.C. (1998). Variations in the interferon-inducing capacity of Sendaivirus subpopulations. J Interferon CytokineRes18, 399―405.

doi: 10.1089/jir.1998.18.399
Melchior, F., Schergaut, M., and Pichler, A. (2003). SUMO:ligases, isopeptidases and nuclear pores. Trends Biochem Sci28, 612―618.

doi: 10.1016/j.tibs.2003.09.002
Meylan, E., Curran, J., Hofmann, K., Moradpour, D., Binder, M., Bartenschlager, R., and Tschopp, J. (2005). Cardif is an adaptorprotein in the RIG-I antiviral pathway and is targeted by hepatitisC virus. Nature437, 1167―1172.

doi: 10.1038/nature04193
Meylan, E., Tschopp, J., and Karin, M. (2006). Intracellularpattern recognition receptors in the host response. Nature442, 39―44.

doi: 10.1038/nature04946
Rubinson, D.A., Dillon, C.P., Kwiatkowski, A.V., Sievers, C., Yang, L., Kopinja, J., Rooney, D.L., Zhang, M., Ihrig, M.M., McManus, M.T., et al.(2003). A lentivirus-based system to functionallysilence genes in primary mammalian cells, stem cells and transgenicmice by RNA interference. Nat Genet33, 401―406.

doi: 10.1038/ng1117
Saito, T., Hirai, R., Loo, Y.M., Owen, D., Johnson, C.L., Sinha, S.C., Akira, S., Fujita, T., and Gale, M., Jr.(2007). Regulationof innate antiviral defenses through a shared repressor domain inRIG-I and LGP2. Proc Natl Acad Sci U SA104, 582―587.

doi: 10.1073/pnas.0606699104
Schwamborn, K., Knipscheer, P., van Dijk, E., van Dijk, W.J., Sixma, T.K., Meloen, R.H., and Langedijk, J.P. (2008). SUMOassay with peptide arrays on solid support: insights into SUMO targetsites. J Biochem144, 39―49.

doi: 10.1093/jb/mvn039
Seth, R.B., Sun, L., Ea, C.K., and Chen, Z.J. (2005). Identification and characterization of MAVS, a mitochondrialantiviral signaling protein that activates NF-kappaB and IRF 3. Cell122, 669―682.

doi: 10.1016/j.cell.2005.08.012
Song, J., Durrin, L.K., Wilkinson, T.A., Krontiris, T.G., and Chen, Y. (2004). Identification of a SUMO-binding motif that recognizesSUMO-modified proteins. Proc Natl AcadSci U S A101, 14373―14378.
Steffan, J.S., Agrawal, N., Pallos, J., Rockabrand, E., Trotman, L.C., Slepko, N., Illes, K., Lukacsovich, T., Zhu, Y.Z., Cattaneo, E., et al. (2004). SUMO modification of Huntingtinand Huntington's disease pathology. Science304, 100―104.

doi: 10.1126/science.1092194
Sui, G., and Shi, Y. (2005). Gene silencing by a DNA vector-based RNAi technology. Methods Mol Biol309, 205―218.
Taniguchi, T., and Takaoka, A. (2001). A weak signal for strong responses: interferon-alpha/betarevisited. Nat Rev Mol Cell Biol2, 378―386.

doi: 10.1038/35073080
Taniguchi, T., and Takaoka, A. (2002). The interferon-alpha/beta system in antiviral responses:a multimodal machinery of gene regulation by the IRF family of transcriptionfactors. Curr Opin Immunol14, 111―116.

doi: 10.1016/S0952-7915(01)00305-3
Xu, J., He, Y., Qiang, B., Yuan, J., Peng, X., and Pan, X.M. (2008). A novel method forhigh accuracy sumoylation site prediction from protein sequences. BMC Bioinformatics9, 8.

doi: 10.1186/1471-2105-9-8
Xu, L.G., Wang, Y.Y., Han, K.J., Li, L.Y., Zhai, Z., and Shu, H.B. (2005). VISA is an adapterprotein required for virus-triggered IFN-beta signaling. Mol Cell19, 727―740.

doi: 10.1016/j.molcel.2005.08.014
Yoneyama, M., and Fujita, T. (2008). Structural mechanism of RNA recognition by the RIG-I-likereceptors. Immunity29, 178―181.

doi: 10.1016/j.immuni.2008.07.009
Yoneyama, M., Kikuchi, M., Matsumoto, K., Imaizumi, T., Miyagishi, M., Taira, K., Foy, E., Loo, Y.M., Gale, M., Jr., Akira, S., et al. (2005). Shared and unique functionsof the DExD/H-box helicases RIG-I, MDA5, and LGP2 in antiviral innateimmunity. J Immunol175, 2851―2858.
Yoneyama, M., Kikuchi, M., Natsukawa, T., Shinobu, N., Imaizumi, T., Miyagishi, M., Taira, K., Akira, S., and Fujita, T. (2004). TheRNA helicase RIG-I has an essential function in double-stranded RNA-inducedinnate antiviral responses. Nat Immunol5, 730―737.

doi: 10.1038/ni1087
Zhao, C., Denison, C., Huibregtse, J.M., Gygi, S., and Krug, R.M. (2005). Human ISG15 conjugation targets both IFN-induced andconstitutively expressed proteins functioning in diverse cellularpathways. Proc Natl Acad Sci U S A102, 10200―10205.

doi: 10.1073/pnas.0504754102
Zheng, L., Baumann, U., and Reymond, J.L. (2004). An efficientone-step site-directed and site-saturation mutagenesis protocol. Nucleic Acids Res32, e115.

doi: 10.1093/nar/gnh110
[1] Donghao Sun, Xuetao Cao, Chunmei Wang. Polycomb chromobox Cbx2 enhances antiviral innate immunity by promoting Jmjd3-mediated demethylation of H3K27 at the Ifnb promoter[J]. Protein Cell, 2019, 10(4): 285-294.
[2] Xiaolin Zhang, Wei Yang, Xinlu Wang, Xuyuan Zhang, Huabin Tian, Hongyu Deng, Liguo Zhang, Guangxia Gao. Identification of new type I interferonstimulated genes and investigation of their involvement in IFN-β activation[J]. Protein Cell, 2018, 9(9): 799-807.
[3] Xiao-xiao Xu, Han Wan, Li Nie, Tong Shao, Li-xin Xiang, Jian-zhong Shao. RIG-I: a multifunctional protein beyond a pattern recognition receptor[J]. Protein Cell, 2018, 9(3): 246-253.
[4] Saurabh Chattopadhyay,Ganes C. Sen. RIG-I-like receptor-induced IRF3 mediated pathway of apoptosis (RIPA): a new antiviral pathway[J]. Protein Cell, 2017, 8(3): 165-168.
[5] Yan Jiang,Yanping Zhu,Zhi-Jie Liu,Songying Ouyang. The emerging roles of the DDX41 protein in immunity and diseases[J]. Protein Cell, 2017, 8(2): 83-89.
[6] Pengyan Xia,Shuo Wang,Pu Gao,Guangxia Gao,Zusen Fan. DNA sensor cGAS-mediated immune recognition[J]. Protein Cell, 2016, 7(11): 777-791.
[7] Chunju Fang,Xiawei Wei,Yuquan Wei. Mitochondrial DNA in the regulation of innate immune responses[J]. Protein Cell, 2016, 07(1): 11-16.
[8] Ming Wang,Jing Sang,Yanhua Ren,Kejia Liu,Xinyi Liu,Jian Zhang,Haolu Wang,Jian Wang,Amir Orian,Jie Yang,Jing Yi. SENP3 regulates the global protein turnover and the Sp1 level via antagonizing SUMO2/ 3-targeted ubiquitination and degradation[J]. Protein Cell, 2016, 07(1): 63-77.
[9] Yingli Shang,Sinead Smith,Xiaoyu Hu. Role of Notch signaling in regulating innate immunity and inflammation in health and disease[J]. Protein Cell, 2016, 07(03): 159-174.
[10] Mohsan Ullah Goraya,Song Wang,Muhammad Munir,Ji-Long Chen. Induction of innate immunity and its perturbation by influenza viruses[J]. Protein Cell, 2015, 6(10): 712-721.
[11] Guanghua Xu,Jing Wang,George Fu Gao,Cui Hua Liu. Insights into battles between Mycobacterium tuberculosis and macrophages[J]. Protein Cell, 2014, 5(10): 728-736.
[12] Hua Li, Shuxian Wu, Liming Mao, Guowei Lei, Liping Zhang, Ailing Lu, Liguo An, Guiwen Yang, Paride Abliz, Guangxun Meng. Human pathogenic fungus Trichophytonschoenleinii activates the NLRP3 inflammasome[J]. Prot Cell, 2013, 4(7): 529-538.
[13] Hongbin Wang, Yue Xing, Liming Mao, Yi Luo, Lishan Kang, Guangxun Meng. Pannexin-1 influences peritoneal cavity cell population but is not involved in NLRP3 inflammasome activation[J]. Prot Cell, 2013, 4(4): 259-265.
[14] Miao Feng, Zhanyu Ding, Liang Xu, Liangliang Kong, Wenjia Wang, Shi Jiao, Zhubing Shi, Mark I. Greene, Yao Cong, Zhaocai Zhou. Structural and biochemical studies of RIG-I antiviral signaling[J]. Prot Cell, 2013, 4(2): 142-154.
[15] Huihui Chen, Zhengfan Jiang. The essential adaptors of innate immune signaling[J]. Prot Cell, 2013, 4(1): 27-39.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed