|
|
Role of small RNAs in the interaction between Arabidopsis and Pseudomonas syringae |
Yan LI1, Wenming WANG1, Jian-Min ZHOU2() |
1. Rice Research Institute, Sichuan Agricultural University, Wenjiang 611130, China; 2. National Institute of Biological Sciences, Beijing, Beijing 102206, China |
|
|
Abstract Endogenous small RNAs (miRNAs and siRNAs) regulate gene expression in diverse biological processes. Research with the Arabidopsis-Pseudomonas syringae system has shown that small RNAs contribute to plant immunity by regulating the expression of their target genes. Plant immunity can be triggered by pathogen-associated molecular patterns (PAMPs) or effector proteins that are delivered into the host cell by the pathogen. Experimental evidence indicates that the miRNA pathway play a major role in PAMP-triggered immunity while some of the siRNA pathways appear to be more important in effector-triggered immunity. In addition, some P. syringae effector proteins appear to inhibit miRNA biogenesis or function to enhance bacterial virulence. These exciting findings illustrate a new battle ground for plant-pathogen interactions.
|
Keywords
miRNA
siRNA
PTI
ETI
effectors
|
Corresponding Author(s):
ZHOU Jian-Min,Email:zhoujianmin@nibs.ac.cn
|
Issue Date: 01 December 2011
|
|
1 |
Agorio A, Vera P (2007). ARGONAUTE4 is required for resistance to Pseudomonas syringae in Arabidopsis. Plant Cell , 19(11): 3778–3790 doi: 10.1105/tpc.107.054494 pmid:17993621
|
2 |
Baulcombe D (2004). RNA silencing in plants. Nature , 431(7006): 356–363 doi: 10.1038/nature02874 pmid:15372043
|
3 |
Boller T, He S Y (2009). Innate immunity in plants: an arms race between pattern recognition receptors in plants and effectors in microbial pathogens. Science , 324(5928): 742–744 doi: 10.1126/science.1171647 pmid:19423812
|
4 |
Chapman E J, Carrington J C (2007). Specialization and evolution of endogenous small RNA pathways. Nat Rev Genet , 8(11): 884–896 doi: 10.1038/nrg2179 pmid:17943195
|
5 |
Chisholm S T, Coaker G, Day B, Staskawicz B J (2006). Host-microbe interactions: shaping the evolution of the plant immune response. Cell , 124(4): 803–814 doi: 10.1016/j.cell.2006.02.008 pmid:16497589
|
6 |
Crane Y M, Gelvin S B (2007). RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation. Proc Natl Acad Sci USA , 104(38): 15156–15161 doi: 10.1073/pnas.0706986104 pmid:17827277
|
7 |
Cui H T, Wang Y J, Xue L, Chu J F, Yan C Y, Fu J H, Chen M S, Innes R W, Zhou J M (2010). Pseudomonas syringae effector protein AvrB perturbs Arabidopsis hormone signaling by activating MAP kinase 4. Cell Host Microbe , 7(2): 164–175 doi: 10.1016/j.chom.2010.01.009 pmid:20159621
|
8 |
Fahlgren N, Howell M D, Kasschau K D, Chapman E J, Sullivan C M, Cumbie J S, Givan S A, Law T F, Grant S R, Dangl J L, Carrington J C (2007). High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS ONE , 2(2): e219 doi: 10.1371/journal.pone.0000219 pmid:17299599
|
9 |
Gimenez-Ibanez S, Hann DR, Ntoukakis V, Petutschnig E, Lipka V, Rathjen JP (2009). AvrPtoB targets the LysM receptor kinase CERK1 to promote bacterial virulence on plants. Curr Boil , 19: 423–430
|
10 |
G?hre V, Spallek T, H?weker H, Mersmann S, Mentzel T, Boller T, de Torres M, Mansfield J W, Robatzek S (2008). Plant pattern-recognition receptor FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB. Curr Biol , 18(23): 1824–1832 doi: 10.1016/j.cub.2008.10.063 pmid:19062288
|
11 |
He X F, Fang Y Y, Feng L, Guo H S (2008). Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica. FEBS Lett , 582(16): 2445–2452 doi: 10.1016/j.febslet.2008.06.011 pmid:18558089
|
12 |
Jagadeeswaran G, Saini A, Sunkar R (2009). Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis. Planta , 229(4): 1009–1014 doi: 10.1007/s00425-009-0889-3 pmid:19148671
|
13 |
Jones J D G, Dangl J L (2006). The plant immune system. Nature , 444(7117): 323–329 doi: 10.1038/nature05286 pmid:17108957
|
14 |
Katiyar-Agarwal S, Gao S, Vivian-Smith A, Jin H L (2007). A novel class of bacteria-induced small RNAs in Arabidopsis. Genes Dev , 21(23): 3123–3134 doi: 10.1101/gad.1595107 pmid:18003861
|
15 |
Katiyar-Agarwal S, Jin H L (2010). Role of small RNAs in host-microbe interactions. Annu Rev Phytopathol , 48(1): 225–246 doi: 10.1146/annurev-phyto-073009-114457 pmid:20687832
|
16 |
Katiyar-Agarwal S, Morgan R, Dahlbeck D, Borsani O, Villegas A Jr, Zhu J K, Staskawicz B J, Jin H L (2006). A pathogen-inducible endogenous siRNA in plant immunity. Proc Natl Acad Sci USA , 103(47): 18002–18007 doi: 10.1073/pnas.0608258103 pmid:17071740
|
17 |
Lanet E, Delannoy E, Sormani R, Floris M, Brodersen P, Crété P, Voinnet O, Robaglia C (2009). Biochemical evidence for translational repression by Arabidopsis microRNAs. Plant Cell , 21(6): 1762–1768 doi: 10.1105/tpc.108.063412 pmid:19531599
|
18 |
Li X Y, Lin H, Zhang W G, Zou Y, Zhang J, Tang X Y, Zhou J M (2005). Flagellin induces innate immunity in nonhost interactions that is suppressed by Pseudomonas syringae effectors. Proc Natl Acad Sci USA , 102(36): 12990–12995 doi: 10.1073/pnas.0502425102 pmid:16123135
|
19 |
Li Y, Zhang Q Q, Zhang J G, Wu L, Qi Y J, Zhou J M (2010). Identification of microRNAs involved in pathogen-associated molecular pattern-triggered plant innate immunity. Plant Physiol , 152(4): 2222–2231 doi: 10.1104/pp.109.151803 pmid:20164210
|
20 |
Liu J, Elmore J M, Lin Z J, Coaker G (2011). A receptor-like cytoplasmic kinase phosphorylates the host target RIN4, leading to the activation of a plant innate immune receptor. Cell Host Microbe , 9(2): 137–146 doi: 10.1016/j.chom.2011.01.010 pmid:21320696
|
21 |
Lu S F, Sun Y H, Amerson H, Chiang V L (2007). MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development. Plant J , 51(6): 1077–1098 doi: 10.1111/j.1365-313X.2007.03208.x pmid:17635765
|
22 |
Morel J B, Godon C, Mourrain P, Béclin C, Boutet S, Feuerbach F, Proux F, Vaucheret H (2002). Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell , 14(3): 629–639 doi: 10.1105/tpc.010358 pmid:11910010
|
23 |
Mori I C, Schroeder J I (2004). Reactive oxygen species activation of plant Ca2+ channels. A signaling mechanism in polar growth, hormone transduction, stress signaling, and hypothetically mechanotransduction. Plant Physiol , 135(2): 702–708 doi: 10.1104/pp.104.042069 pmid:15208417
|
24 |
Mourrain P, Béclin C, Elmayan T, Feuerbach F, Godon C, Morel J B, Jouette D, Lacombe A M, Nikic S, Picault N, Rémoué K, Sanial M, Vo T A, Vaucheret H (2000). ArabidopsisSGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell , 101(5): 533–542 doi: 10.1016/S0092-8674(00)80863-6 pmid:10850495
|
25 |
Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, Estelle M, Voinnet O, Jones J D (2006). A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science , 312(5772): 436–439 doi: 10.1126/science.1126088 pmid:16627744
|
26 |
Navarro L, Jay F, Nomura K, He S Y, Voinnet O (2008). Suppression of the microRNA pathway by bacterial effector proteins. Science , 321(5891): 964–967 doi: 10.1126/science.1159505 pmid:18703740
|
27 |
Padmanabhan C, Zhang X, Jin H L (2009). Host small RNAs are big contributors to plant innate immunity. Curr Opin Plant Biol , 12(4): 465–472 doi: 10.1016/j.pbi.2009.06.005 pmid:19608454
|
28 |
Sarris P F, Gao S, Karademiris K, Jin H, Kalantidis K, Panopoulos N J (2011). Phytobacterial type III effectors HopX1, HopAB1 and HopF2 enhance sense-post transcriptional gene silencing independently of plant R gene-effector recognition. Mol Plant Microbe Interact , 24(8): 907–907 doi: 10.1094/MPMI-01-11-0010
|
29 |
Wang Y J, Li J F, Hou S G, Wang X W, Li Y, Ren D T, Chen S, Tang X Y, Zhou J M (2010). A Pseudomonas syringae ADP-ribosyltransferase inhibits Arabidopsis mitogen-activated protein kinase kinases. Plant Cell , 22(6): 2033–2044 doi: 10.1105/tpc.110.075697 pmid:20571112
|
30 |
Wilton M, Subramaniam R, Elmore J, Felsensteiner C, Coaker G, Desveaux D (2010). The type III effector HopF2Pto targets Arabidopsis RIN4 protein to promote Pseudomonas syringae virulence. Proc Natl Acad Sci USA , 107(5): 2349–2354 doi: 10.1073/pnas.0904739107 pmid:20133879
|
31 |
Xiang T T, Zong N, Zou Y, Wu Y, Zhang J, Xing W M, Li Y, Tang X Y, Zhu L H, Chai J J, Zhou J M (2008). Pseudomonas syringae effector AvrPto blocks innate immunity by targeting receptor kinases. Curr Biol , 18(1): 74–80 doi: 10.1016/j.cub.2007.12.020 pmid:18158241
|
32 |
Yan Y, Zhang Y, Yang K, Sun Z, Fu Y, Chen X, Fang R (2011). Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice. Plant J , 65(5): 820–828 doi: 10.1111/j.1365-313X.2010.04467.x pmid:21251104
|
33 |
Yu D, Fan B, MacFarlane S A, Chen Z (2003). Analysis of the involvement of an inducible Arabidopsis RNA-dependent RNA polymerase in antiviral defense. Mol Plant Microbe Interact , 16(3): 206–216 doi: 10.1094/MPMI.2003.16.3.206 pmid:12650452
|
34 |
Zhang J, Li W, Xiang T T, Liu Z X, Laluk K, Ding X J, Zou Y, Gao M H, Zhang X J, Chen S, Mengiste T, Zhang Y L, Zhou J M (2010). Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector. Cell Host Microbe , 7(4): 290–301 doi: 10.1016/j.chom.2010.03.007 pmid:20413097
|
35 |
Zhang J, Shao F, Li Y, Cui H T, Chen L J, Li H T, Zou Y, Long C Z, Lan L F, Chai J J, Chen S, Tang X Y, Zhou J M (2007). A Pseudomonas syringae effector inactivates MAPKs to suppress PAMP-induced immunity in plants. Cell Host Microbe , 1(3): 175–185 doi: 10.1016/j.chom.2007.03.006 pmid:18005697
|
36 |
Zhang X, Zhao H, Gao S, Wang W C, Katiyar-Agarwal S, Huang H D, Raikhel N, Jin H (2011). Arabidopsis Argonaute 2 regulates innate immunity via miRNA393*-mediated silencing of a Golgi-localized SNARE gene, MEMB12. Mol Cell , 42(3): 356–366 doi: 10.1016/j.molcel.2011.04.010 pmid:21549312
|
37 |
Zhou H, Lin J, Johnson A, Morgan R L, Zhong W, Ma W (2011). Pseudomonas syringae type III effector HopZ1 targets a host enzyme to suppress isoflavone biosynthesis and promote infection in soybean. Cell Host Microbe , 9(3): 177–186 doi: 10.1016/j.chom.2011.02.007 pmid:21402357
|
38 |
Zhou L, Liu Y, Liu Z, Kong D, Duan M, Luo L (2010). Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J Exp Bot , 61(15): 4157–4168 doi: 10.1093/jxb/erq237 pmid:20729483
|
39 |
Zhou X, Sunkar R, Jin H, Zhu J K, Zhang W (2009). Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome Res , 19(1): 70–78 doi: 10.1101/gr.084806.108 pmid:18971307
|
40 |
Zilberman D, Cao X, Jacobsen S E (2003). ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science , 299(5607): 716–719 doi: 10.1126/science.1079695 pmid:12522258
|
41 |
Zilberman D, Cao X F, Johansen L K, Xie Z X, Carrington J C, Jacobsen S E (2004). Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr Biol , 14(13): 1214–1220 doi: 10.1016/j.cub.2004.06.055 pmid:15242620
|
42 |
Zipfel C, Kunze G, Chinchilla D, Caniard A, Jones J D, Boller T, Felix G (2006). Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts Agrobacterium-mediated transformation. Cell , 125(4): 749–760 doi: 10.1016/j.cell.2006.03.037 pmid:16713565
|
43 |
Zipfel C, Robatzek S, Navarro L, Oakeley E J, Jones J D, Felix G, Boller T (2004). Bacterial disease resistance in Arabidopsis through flagellin perception. Nature , 428(6984): 764–767 doi: 10.1038/nature02485 pmid:15085136
|
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
|
Shared |
|
|
|
|
|
Discussed |
|
|
|
|