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Emerging roles of autophagy in metabolism and metabolic disorders |
Altea Rocchi,Congcong He( ) |
Department of Cell and Molecular Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA |
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Abstract The global prevalence of metabolic disorders is an immediate threat to human health. Genetic features, environmental aspects and lifestyle changes are the major risk factors determining metabolic dysfunction in the body. Autophagy is a housekeeping stress-induced lysosomal degradation pathway, which recycles macromolecules and metabolites for new protein synthesis and energy production and regulates cellular homeostasis by clearance of damaged protein or organelles. Recently, a dramatically increasing number of literatures has shown that defects of the autophagic machinery is associated with dysfunction of multiple metabolic tissues including pancreatic β cells, liver, adipose tissue and muscle, and is implicated in metabolic disorders such as obesity and insulin resistance. Here in this review, we summarize the representative works on these topics and discuss the versatile roles of autophagy in the regulation of cellular metabolism and its possible implication in metabolic diseases.
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Keywords
autophagy
selective autophagy
metabolism
metabolic disease
obesity
diabetes
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Corresponding Author(s):
Congcong He
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Just Accepted Date: 05 March 2015
Online First Date: 30 March 2015
Issue Date: 06 May 2015
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|
1 |
Axe E L, Walker S A, Manifava M, Chandra P, Roderick H L, Habermann A, Griffiths G, Ktistakis N T (2008). Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum. J Cell Biol, 182(4): 685–701
https://doi.org/10.1083/jcb.200803137
pmid: 18725538
|
2 |
Baerga R, Zhang Y, Chen P H, Goldman S, Jin S (2009). Targeted deletion of autophagy-related 5 (atg5) impairs adipogenesis in a cellular model and in mice. Autophagy, 5(8): 1118–1130
https://doi.org/10.4161/auto.5.8.9991
pmid: 19844159
|
3 |
Bj?rk?y G, Lamark T, Brech A, Outzen H, Perander M, ?vervatn A, Stenmark H, Johansen T (2005). p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death. J Cell Biol, 171(4): 603–614
https://doi.org/10.1083/jcb.200507002
pmid: 16286508
|
4 |
Boyle K B, Randow F (2013). The role of ‘eat-me’ signals and autophagy cargo receptors in innate immunity. Curr Opin Microbiol, 16(3): 339–348
https://doi.org/10.1016/j.mib.2013.03.010
pmid: 23623150
|
5 |
Burman C, Ktistakis N T (2010). Regulation of autophagy by phosphatidylinositol 3-phosphate. FEBS Lett, 584(7): 1302–1312
https://doi.org/10.1016/j.febslet.2010.01.011
pmid: 20074568
|
6 |
Campello S, Strappazzon F, Cecconi F (2014). Mitochondrial dismissal in mammals, from protein degradation to mitophagy. Biochim Biophys Acta, 1837(4): 451–460
https://doi.org/10.1016/j.bbabio.2013.11.010
pmid: 24275087
|
7 |
Cebollero E, Reggiori F, Kraft C (2012). Reticulophagy and ribophagy: regulated degradation of protein production factories. Int J Cell Biol, 2012: 182834
pmid: 22481944
|
8 |
Cecconi F, Levine B (2008). The role of autophagy in mammalian development: cell makeover rather than cell death. Dev Cell, 15(3): 344–357
https://doi.org/10.1016/j.devcel.2008.08.012
pmid: 18804433
|
9 |
Coupé B, Ishii Y, Dietrich M O, Komatsu M, Horvath T L, Bouret S G (2012). Loss of autophagy in pro-opiomelanocortin neurons perturbs axon growth and causes metabolic dysregulation. Cell Metab, 15(2): 247–255
https://doi.org/10.1016/j.cmet.2011.12.016
pmid: 22285542
|
10 |
De Duve C, Wattiaux R (1966). Functions of lysosomes. Annu Rev Physiol, 28(1): 435–492
https://doi.org/10.1146/annurev.ph.28.030166.002251
pmid: 5322983
|
11 |
Ebato C, Uchida T, Arakawa M, Komatsu M, Ueno T, Komiya K, Azuma K, Hirose T, Tanaka K, Kominami E, Kawamori R, Fujitani Y, Watada H (2008). Autophagy is important in islet homeostasis and compensatory increase of beta cell mass in response to high-fat diet. Cell Metab, 8(4): 325–332
https://doi.org/10.1016/j.cmet.2008.08.009
pmid: 18840363
|
12 |
Elzinga B M, Nyhan M J, Crowley L C, O’Donovan T R, Cahill M R, McKenna S L (2013). Induction of autophagy by Imatinib sequesters Bcr-Abl in autophagosomes and down-regulates Bcr-Abl protein. Am J Hematol, 88(6): 455–462
https://doi.org/10.1002/ajh.23428
pmid: 23440701
|
13 |
Geisler S, Holmstr?m K M, Skujat D, Fiesel F C, Rothfuss O C, Kahle P J, Springer W (2010). PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1. Nat Cell Biol, 12(2): 119–131
https://doi.org/10.1038/ncb2012
pmid: 20098416
|
14 |
Geng J, Klionsky D J (2008). The Atg8 and Atg12 ubiquitin-like conjugation systems in macroautophagy. ‘Protein modifications: beyond the usual suspects’ review series. EMBO Rep, 9(9): 859–864
https://doi.org/10.1038/embor.2008.163
pmid: 18704115
|
15 |
Goldman S, Zhang Y, Jin S (2010). Autophagy and adipogenesis: implications in obesity and type II diabetes. Autophagy, 6(1): 179–181
https://doi.org/10.4161/auto.6.1.10814
pmid: 20110772
|
16 |
Gonzalez C D, Lee M S, Marchetti P, Pietropaolo M, Towns R, Vaccaro M I, Watada H, Wiley J W (2011). The emerging role of autophagy in the pathophysiology of diabetes mellitus. Autophagy, 7(1): 2–11
https://doi.org/10.4161/auto.7.1.13044
pmid: 20935516
|
17 |
Grumati P, Coletto L, Schiavinato A, Castagnaro S, Bertaggia E, Sandri M, Bonaldo P (2011). Physical exercise stimulates autophagy in normal skeletal muscles but is detrimental for collagen VI-deficient muscles. Autophagy, 7(12): 1415–1423
https://doi.org/10.4161/auto.7.12.17877
pmid: 22024752
|
18 |
Guariguata L, Whiting D R, Hambleton I, Beagley J, Linnenkamp U, Shaw J E (2014). Global estimates of diabetes prevalence for 2013 and projections for 2035. Diabetes Res Clin Pract, 103(2): 137–149
https://doi.org/10.1016/j.diabres.2013.11.002
pmid: 24630390
|
19 |
Hanada T, Noda N N, Satomi Y, Ichimura Y, Fujioka Y, Takao T, Inagaki F, Ohsumi Y (2007). The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy. J Biol Chem, 282(52): 37298–37302
https://doi.org/10.1074/jbc.C700195200
pmid: 17986448
|
20 |
Hara T, Takamura A, Kishi C, Iemura S, Natsume T, Guan J L, Mizushima N (2008). FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells. J Cell Biol, 181(3): 497–510
https://doi.org/10.1083/jcb.200712064
pmid: 18443221
|
21 |
He C, Bassik M C, Moresi V, Sun K, Wei Y, Zou Z, An Z, Loh J, Fisher J, Sun Q, Korsmeyer S, Packer M, May H I, Hill J A, Virgin H W, Gilpin C, Xiao G, Bassel-Duby R, Scherer P E, Levine B (2012). Exercise-induced BCL2-regulated autophagy is required for muscle glucose homeostasis. Nature, 481(7382): 511–515
https://doi.org/10.1038/nature10758
pmid: 22258505
|
22 |
He C, Wei Y, Sun K, Li B, Dong X, Zou Z, Liu Y, Kinch L N, Khan S, Sinha S, Xavier R J, Grishin N V, Xiao G, Eskelinen E L, Scherer P E, Whistler J L, Levine B (2013). Beclin 2 functions in autophagy, degradation of G protein-coupled receptors, and metabolism. Cell, 154(5): 1085–1099
https://doi.org/10.1016/j.cell.2013.07.035
pmid: 23954414
|
23 |
Ichimura Y, Waguri S, Sou Y S, Kageyama S, Hasegawa J, Ishimura R, Saito T, Yang Y, Kouno T, Fukutomi T, Hoshii T, Hirao A, Takagi K, Mizushima T, Motohashi H, Lee M S, Yoshimori T, Tanaka K, Yamamoto M, Komatsu M (2013). Phosphorylation of p62 activates the Keap1-Nrf2 pathway during selective autophagy. Mol Cell, 51(5): 618–631
https://doi.org/10.1016/j.molcel.2013.08.003
pmid: 24011591
|
24 |
Jaber N, Dou Z, Chen J S, Catanzaro J, Jiang Y P, Ballou L M, Selinger E, Ouyang X, Lin R Z, Zhang J, Zong W X (2012). Class III PI3K Vps34 plays an essential role in autophagy and in heart and liver function. Proc Natl Acad Sci USA, 109(6): 2003–2008
https://doi.org/10.1073/pnas.1112848109
pmid: 22308354
|
25 |
Jeong H, Then F, Melia T J Jr, Mazzulli J R, Cui L, Savas J N, Voisine C, Paganetti P, Tanese N, Hart A C, Yamamoto A, Krainc D (2009). Acetylation targets mutant huntingtin to autophagosomes for degradation. Cell, 137(1): 60–72
https://doi.org/10.1016/j.cell.2009.03.018
pmid: 19345187
|
26 |
Jiang S, Heller B, Tagliabracci V S, Zhai L, Irimia J M, DePaoli-Roach A A, Wells C D, Skurat A V, Roach P J (2010). Starch binding domain-containing protein 1/genethonin 1 is a novel participant in glycogen metabolism. J Biol Chem, 285(45): 34960–34971
https://doi.org/10.1074/jbc.M110.150839
pmid: 20810658
|
27 |
Jiang S, Wells C D, Roach P J (2011). Starch-binding domain-containing protein 1 (Stbd1) and glycogen metabolism: Identification of the Atg8 family interacting motif (AIM) in Stbd1 required for interaction with GABARAPL1. Biochem Biophys Res Commun, 413(3): 420–425
https://doi.org/10.1016/j.bbrc.2011.08.106
pmid: 21893048
|
28 |
Jiang Y, Huang W, Wang J, Xu Z, He J, Lin X, Zhou Z, Zhang J (2014). Metformin plays a dual role in MIN6 pancreatic β cell function through AMPK-dependent autophagy. Int J Biol Sci, 10(3): 268–277
https://doi.org/10.7150/ijbs.7929
pmid: 24644425
|
29 |
Johansen T, Lamark T (2011). Selective autophagy mediated by autophagic adapter proteins. Autophagy, 7(3): 279–296
https://doi.org/10.4161/auto.7.3.14487
pmid: 21189453
|
30 |
Jung C H, Jun C B, Ro S H, Kim Y M, Otto N M, Cao J, Kundu M, Kim D H (2009). ULK-Atg13-FIP200 complexes mediate mTOR signaling to the autophagy machinery. Mol Biol Cell, 20(7): 1992–2003
https://doi.org/10.1091/mbc.E08-12-1249
pmid: 19225151
|
31 |
Jung C H, Ro S H, Cao J, Otto N M, Kim D H (2010). mTOR regulation of autophagy. FEBS Lett, 584(7): 1287–1295
https://doi.org/10.1016/j.febslet.2010.01.017
pmid: 20083114
|
32 |
Jung H S, Chung K W, Won Kim J, Kim J, Komatsu M, Tanaka K, Nguyen Y H, Kang T M, Yoon K H, Kim J W, Jeong Y T, Han M S, Lee M K, Kim K W, Shin J, Lee M S (2008). Loss of autophagy diminishes pancreatic beta cell mass and function with resultant hyperglycemia. Cell Metab, 8(4): 318–324
https://doi.org/10.1016/j.cmet.2008.08.013
pmid: 18840362
|
33 |
Jung H S, Lee M S (2010). Role of autophagy in diabetes and mitochondria. Ann N Y Acad Sci, 1201(1): 79–83
https://doi.org/10.1111/j.1749-6632.2010.05614.x
pmid: 20649543
|
34 |
Kageyama S, Sou Y S, Uemura T, Kametaka S, Saito T, Ishimura R, Kouno T, Bedford L, Mayer R J, Lee M S, Yamamoto M, Waguri S, Tanaka K, Komatsu M (2014). Proteasome dysfunction activates autophagy and the Keap1-Nrf2 pathway. J Biol Chem, 289(36): 24944–24955
https://doi.org/10.1074/jbc.M114.580357
pmid: 25049227
|
35 |
Kahn S E, Hull R L, Utzschneider K M (2006). Mechanisms linking obesity to insulin resistance and type 2 diabetes. Nature, 444(7121): 840–846
https://doi.org/10.1038/nature05482
pmid: 17167471
|
36 |
Kalender A, Selvaraj A, Kim S Y, Gulati P, Br?lé S, Viollet B, Kemp B E, Bardeesy N, Dennis P, Schlager J J, Marette A, Kozma S C, Thomas G (2010). Metformin, independent of AMPK, inhibits mTORC1 in a rag GTPase-dependent manner. Cell Metab, 11(5): 390–401
https://doi.org/10.1016/j.cmet.2010.03.014
pmid: 20444419
|
37 |
Kane L A, Lazarou M, Fogel A I, Li Y, Yamano K, Sarraf S A, Banerjee S, Youle R J (2014). PINK1 phosphorylates ubiquitin to activate Parkin E3 ubiquitin ligase activity. J Cell Biol, 205(2): 143–153
pmid: 24751536
|
38 |
Kaushik S, Arias E, Kwon H, Lopez N M, Athonvarangkul D, Sahu S, Schwartz G J, Pessin J E, Singh R (2012). Loss of autophagy in hypothalamic POMC neurons impairs lipolysis. EMBO Rep, 13(3): 258–265
https://doi.org/10.1038/embor.2011.260
pmid: 22249165
|
39 |
Kaushik S, Cuervo A M (2012). Chaperone-mediated autophagy: a unique way to enter the lysosome world. Trends Cell Biol, 22(8): 407–417
https://doi.org/10.1016/j.tcb.2012.05.006
pmid: 22748206
|
40 |
Kaushik S, Rodriguez-Navarro J A, Arias E, Kiffin R, Sahu S, Schwartz G J, Cuervo A M, Singh R (2011). Autophagy in hypothalamic AgRP neurons regulates food intake and energy balance. Cell Metab, 14(2): 173–183
https://doi.org/10.1016/j.cmet.2011.06.008
pmid: 21803288
|
41 |
Kazlauskaite A, Kondapalli C, Gourlay R, Campbell D G, Ritorto M S, Hofmann K, Alessi D R, Knebel A, Trost M, Muqit M M (2014). Parkin is activated by PINK1-dependent phosphorylation of ubiquitin at Ser65. Biochem J, 460(1): 127–139
https://doi.org/10.1042/BJ20140334
pmid: 24660806
|
42 |
Kim K H, Jeong Y T, Oh H, Kim S H, Cho J M, Kim Y N, Kim S S, Kim H, Hur K Y, Kim H K, Ko T, Han J, Kim H L, Kim J, Back S H, Komatsu M, Chen H, Chan D C, Konishi M, Itoh N, Choi C S, Lee M S (2013). Autophagy deficiency leads to protection from obesity and insulin resistance by inducing Fgf21 as a mitokine. Nat Med, 19(1): 83–92
https://doi.org/10.1038/nm.3014
pmid: 23202295
|
43 |
Kim K H, Lee M S (2014). Autophagy—a key player in cellular and body metabolism. Nat Rev Endocrinol, 10(6): 322–337
https://doi.org/10.1038/nrendo.2014.35
pmid: 24663220
|
44 |
Kirkin V, Lamark T, Sou Y S, Bj?rk?y G, Nunn J L, Bruun J A, Shvets E, McEwan D G, Clausen T H, Wild P, Bilusic I, Theurillat J P, ?vervatn A, Ishii T, Elazar Z, Komatsu M, Dikic I, Johansen T (2009). A role for NBR1 in autophagosomal degradation of ubiquitinated substrates. Mol Cell, 33(4): 505–516
pmid: 19250911
|
45 |
Knaevelsrud H, Simonsen A (2010). Fighting disease by selective autophagy of aggregate-prone proteins. FEBS Lett, 584(12): 2635–2645
https://doi.org/10.1016/j.febslet.2010.04.041
pmid: 20412801
|
46 |
Komatsu M, Kurokawa H, Waguri S, Taguchi K, Kobayashi A, Ichimura Y, Sou Y S, Ueno I, Sakamoto A, Tong K I, Kim M, Nishito Y, Iemura S, Natsume T, Ueno T, Kominami E, Motohashi H, Tanaka K, Yamamoto M (2010). The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1. Nat Cell Biol, 12(3): 213–223
pmid: 20173742
|
47 |
Komatsu M, Waguri S, Ueno T, Iwata J, Murata S, Tanida I, Ezaki J, Mizushima N, Ohsumi Y, Uchiyama Y, Kominami E, Tanaka K, Chiba T (2005). Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice. J Cell Biol, 169(3): 425–434
https://doi.org/10.1083/jcb.200412022
pmid: 15866887
|
48 |
Korac J, Schaeffer V, Kovacevic I, Clement A M, Jungblut B, Behl C, Terzic J, Dikic I (2013). Ubiquitin-independent function of optineurin in autophagic clearance of protein aggregates. J Cell Sci, 126(Pt 2): 580–592
https://doi.org/10.1242/jcs.114926
pmid: 23178947
|
49 |
Koyano F, Okatsu K, Kosako H, Tamura Y, Go E, Kimura M, Kimura Y, Tsuchiya H, Yoshihara H, Hirokawa T, Endo T, Fon E A, Trempe J F, Saeki Y, Tanaka K, Matsuda N (2014). Ubiquitin is phosphorylated by PINK1 to activate parkin. Nature, 510(7503): 162–166
pmid: 24784582
|
50 |
Kraft C, Deplazes A, Sohrmann M, Peter M (2008). Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease. Nat Cell Biol, 10(5): 602–610
https://doi.org/10.1038/ncb1723
pmid: 18391941
|
51 |
Kroemer G, Mari?o G, Levine B (2010). Autophagy and the integrated stress response. Mol Cell, 40(2): 280–293
https://doi.org/10.1016/j.molcel.2010.09.023
pmid: 20965422
|
52 |
Kuma A, Mizushima N (2010). Physiological role of autophagy as an intracellular recycling system: with an emphasis on nutrient metabolism. Semin Cell Dev Biol, 21(7): 683–690
https://doi.org/10.1016/j.semcdb.2010.03.002
pmid: 20223289
|
53 |
Le Guezennec X, Brichkina A, Huang Y F, Kostromina E, Han W, Bulavin D V (2012). Wip1-dependent regulation of autophagy, obesity, and atherosclerosis. Cell Metab, 16(1): 68–80
https://doi.org/10.1016/j.cmet.2012.06.003
pmid: 22768840
|
54 |
Lee J M, Wagner M, Xiao R, Kim K H, Feng D, Lazar M A, Moore D D (2014). Nutrient-sensing nuclear receptors coordinate autophagy. Nature, 516(7529): 112–115
pmid: 25383539
|
55 |
Levine B, Klionsky D J (2004). Development by self-digestion: molecular mechanisms and biological functions of autophagy. Dev Cell, 6(4): 463–477
https://doi.org/10.1016/S1534-5807(04)00099-1
pmid: 15068787
|
56 |
Levine B, Kroemer G (2008). Autophagy in the pathogenesis of disease. Cell, 132(1): 27–42
https://doi.org/10.1016/j.cell.2007.12.018
pmid: 18191218
|
57 |
Lim Y M, Lim H, Hur K Y, Quan W, Lee H Y, Cheon H, Ryu D, Koo S H, Kim H L, Kim J, Komatsu M, Lee M S (2014). Systemic autophagy insufficiency compromises adaptation to metabolic stress and facilitates progression from obesity to diabetes. Nat Commun, 5: 4934
https://doi.org/10.1038/ncomms5934
pmid: 25255859
|
58 |
Lira V A, Okutsu M, Zhang M, Greene N P, Laker R C, Breen D S, Hoehn K L, Yan Z (2013). Autophagy is required for exercise training-induced skeletal muscle adaptation and improvement of physical performance. FASEB J, 27: 4184–4193
|
59 |
Liu H Y, Han J, Cao S Y, Hong T, Zhuo D, Shi J, Liu Z, Cao W (2009). Hepatic autophagy is suppressed in the presence of insulin resistance and hyperinsulinemia: inhibition of FoxO1-dependent expression of key autophagy genes by insulin. J Biol Chem, 284(45): 31484–31492
https://doi.org/10.1074/jbc.M109.033936
pmid: 19758991
|
60 |
Mammucari C, Milan G, Romanello V, Masiero E, Rudolf R, Del Piccolo P, Burden S J, Di Lisi R, Sandri C, Zhao J, Goldberg A L, Schiaffino S, Sandri M (2007). FoxO3 controls autophagy in skeletal muscle in vivo. Cell Metab, 6(6): 458–471
https://doi.org/10.1016/j.cmet.2007.11.001
pmid: 18054315
|
61 |
Marselli L, Bugliani M, Suleiman M, Olimpico F, Masini M, Petrini M, Boggi U, Filipponi F, Syed F, Marchetti P (2013). β-Cell inflammation in human type 2 diabetes and the role of autophagy. Diabetes Obes Metab, 15(Suppl 3): 130–136
https://doi.org/10.1111/dom.12152
pmid: 24003929
|
62 |
Masiero E, Agatea L, Mammucari C, Blaauw B, Loro E, Komatsu M, Metzger D, Reggiani C, Schiaffino S, Sandri M (2009). Autophagy is required to maintain muscle mass. Cell Metab, 10(6): 507–515
https://doi.org/10.1016/j.cmet.2009.10.008
pmid: 19945408
|
63 |
Matsunaga K, Saitoh T, Tabata K, Omori H, Satoh T, Kurotori N, Maejima I, Shirahama-Noda K, Ichimura T, Isobe T, Akira S, Noda T, Yoshimori T (2009). Two Beclin 1-binding proteins, Atg14L and Rubicon, reciprocally regulate autophagy at different stages. Nat Cell Biol, 11(4): 385–396
https://doi.org/10.1038/ncb1846
pmid: 19270696
|
64 |
Mizushima N (2010). The role of the Atg1/ULK1 complex in autophagy regulation. Curr Opin Cell Biol, 22(2): 132–139
https://doi.org/10.1016/j.ceb.2009.12.004
pmid: 20056399
|
65 |
Mizushima N, Komatsu M (2011). Autophagy: renovation of cells and tissues. Cell, 147(4): 728–741
https://doi.org/10.1016/j.cell.2011.10.026
pmid: 22078875
|
66 |
Mizushima N, Yoshimori T, Ohsumi Y (2011). The role of Atg proteins in autophagosome formation. Annu Rev Cell Dev Biol, 27(1): 107–132
https://doi.org/10.1146/annurev-cellbio-092910-154005
pmid: 21801009
|
67 |
Narendra D, Tanaka A, Suen D F, Youle R J (2008). Parkin is recruited selectively to impaired mitochondria and promotes their autophagy. J Cell Biol, 183(5): 795–803
pmid: 19029340
|
68 |
Newgard C B, An J, Bain J R, Muehlbauer M J, Stevens R D, Lien L F, Haqq A M, Shah S H, Arlotto M, Slentz C A, Rochon J, Gallup D, Ilkayeva O, Wenner B R, Yancy W S Jr, Eisenson H, Musante G, Surwit R S, Millington D S, Butler M D, Svetkey L P (2009). A branched-chain amino acid-related metabolic signature that differentiates obese and lean humans and contributes to insulin resistance. Cell Metab, 9(4): 311–326
https://doi.org/10.1016/j.cmet.2009.02.002
pmid: 19356713
|
69 |
Ogawa M, Yoshikawa Y, Kobayashi T, Mimuro H, Fukumatsu M, Kiga K, Piao Z, Ashida H, Yoshida M, Kakuta S, Koyama T, Goto Y, Nagatake T, Nagai S, Kiyono H, Kawalec M, Reichhart J M, Sasakawa C (2011). A Tecpr1-dependent selective autophagy pathway targets bacterial pathogens. Cell Host Microbe, 9(5): 376–389
https://doi.org/10.1016/j.chom.2011.04.010
pmid: 21575909
|
70 |
Ossareh-Nazari B, Ni?o C A, Bengtson M H, Lee J W, Joazeiro C A, Dargemont C (2014). Ubiquitylation by the Ltn1 E3 ligase protects 60S ribosomes from starvation-induced selective autophagy. J Cell Biol, 204(6): 909–917
https://doi.org/10.1083/jcb.201308139
pmid: 24616224
|
71 |
Ouimet M, Franklin V, Mak E, Liao X, Tabas I, Marcel Y L (2011). Autophagy regulates cholesterol efflux from macrophage foam cells via lysosomal acid lipase. Cell Metab, 13(6): 655–667
https://doi.org/10.1016/j.cmet.2011.03.023
pmid: 21641547
|
72 |
Pankiv S, Clausen T H, Lamark T, Brech A, Bruun J A, Outzen H, ?vervatn A, Bj?rk?y G, Johansen T (2007). p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy. J Biol Chem, 282(33): 24131–24145
https://doi.org/10.1074/jbc.M702824200
pmid: 17580304
|
73 |
Pattingre S, Tassa A, Qu X, Garuti R, Liang X H, Mizushima N, Packer M, Schneider M D, Levine B (2005). Bcl-2 antiapoptotic proteins inhibit Beclin 1-dependent autophagy. Cell, 122(6): 927–939
https://doi.org/10.1016/j.cell.2005.07.002
pmid: 16179260
|
74 |
Proikas-Cezanne T, Waddell S, Gaugel A, Frickey T, Lupas A, Nordheim A (2004). WIPI-1alpha (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy. Oncogene, 23(58): 9314–9325
https://doi.org/10.1038/sj.onc.1208331
pmid: 15602573
|
75 |
Qu X, Zou Z, Sun Q, Luby-Phelps K, Cheng P, Hogan R N, Gilpin C, Levine B (2007). Autophagy gene-dependent clearance of apoptotic cells during embryonic development. Cell, 128(5): 931–946
https://doi.org/10.1016/j.cell.2006.12.044
pmid: 17350577
|
76 |
Quan W, Kim H K, Moon E Y, Kim S S, Choi C S, Komatsu M, Jeong Y T, Lee M K, Kim K W, Kim M S, Lee M S (2012a). Role of hypothalamic proopiomelanocortin neuron autophagy in the control of appetite and leptin response. Endocrinology, 153(4): 1817–1826
https://doi.org/10.1210/en.2011-1882
pmid: 22334718
|
77 |
Quan W, Lim Y M, Lee M S (2012b). Role of autophagy in diabetes and endoplasmic reticulum stress of pancreatic β-cells. Exp Mol Med, 44(2): 81–88
https://doi.org/10.3858/emm.2012.44.2.030
pmid: 22257883
|
78 |
Raben N, Hill V, Shea L, Takikita S, Baum R, Mizushima N, Ralston E, Plotz P (2008). Suppression of autophagy in skeletal muscle uncovers the accumulation of ubiquitinated proteins and their potential role in muscle damage in Pompe disease. Hum Mol Genet, 17(24): 3897–3908
https://doi.org/10.1093/hmg/ddn292
pmid: 18782848
|
79 |
Rabinowitz J D, White E (2010). Autophagy and metabolism. Science, 330(6009): 1344–1348
https://doi.org/10.1126/science.1193497
pmid: 21127245
|
80 |
Ravikumar B, Duden R, Rubinsztein D C (2002). Aggregate-prone proteins with polyglutamine and polyalanine expansions are degraded by autophagy. Hum Mol Genet, 11(9): 1107–1117
https://doi.org/10.1093/hmg/11.9.1107
pmid: 11978769
|
81 |
Rodriguez A, Durán A, Selloum M, Champy M F, Diez-Guerra F J, Flores J M, Serrano M, Auwerx J, Diaz-Meco M T, Moscat J (2006). Mature-onset obesity and insulin resistance in mice deficient in the signaling adapter p62. Cell Metab, 3(3): 211–222
https://doi.org/10.1016/j.cmet.2006.01.011
pmid: 16517408
|
82 |
Ryter S W, Cloonan S M, Choi A M K (2013). Autophagy: a critical regulator of cellular metabolism and homeostasis. Mol Cells, 36(1): 7–16
https://doi.org/10.1007/s10059-013-0140-8
pmid: 23708729
|
83 |
Santambrogio L, Cuervo A M (2011). Chasing the elusive mammalian microautophagy. Autophagy, 7(6): 652–654
https://doi.org/10.4161/auto.7.6.15287
pmid: 21460618
|
84 |
Sengupta A, Molkentin J D, Yutzey K E (2009). FoxO transcription factors promote autophagy in cardiomyocytes. J Biol Chem, 284(41): 28319–28331
https://doi.org/10.1074/jbc.M109.024406
pmid: 19696026
|
85 |
Seok S, Fu T, Choi S E, Li Y, Zhu R, Kumar S, Sun X, Yoon G, Kang Y, Zhong W, Ma J, Kemper B, Kemper J K (2014). Transcriptional regulation of autophagy by an FXR-CREB axis. Nature, 516(7529): 108–111
pmid: 25383523
|
86 |
Settembre C, De Cegli R, Mansueto G, Saha P K, Vetrini F, Visvikis O, Huynh T, Carissimo A, Palmer D, Klisch T J, Wollenberg A C, Di Bernardo D, Chan L, Irazoqui J E, Ballabio A (2013). TFEB controls cellular lipid metabolism through a starvation-induced autoregulatory loop. Nat Cell Biol, 15(6): 647–658
https://doi.org/10.1038/ncb2718
pmid: 23604321
|
87 |
Settembre C, Di Malta C, Polito V A, Garcia Arencibia M, Vetrini F, Erdin S, Erdin S U, Huynh T, Medina D, Colella P, Sardiello M, Rubinsztein D C, Ballabio A (2011). TFEB links autophagy to lysosomal biogenesis. Science, 332(6036): 1429–1433
https://doi.org/10.1126/science.1204592
pmid: 21617040
|
88 |
Shaid S, Brandts C H, Serve H, Dikic I (2013). Ubiquitination and selective autophagy. Cell Death Differ, 20(1): 21–30
https://doi.org/10.1038/cdd.2012.72
pmid: 22722335
|
89 |
Shang L, Wang X (2011). AMPK and mTOR coordinate the regulation of Ulk1 and mammalian autophagy initiation. Autophagy, 7(8): 924–926
https://doi.org/10.4161/auto.7.8.15860
pmid: 21521945
|
90 |
Simonsen A, Birkeland H C, Gillooly D J, Mizushima N, Kuma A, Yoshimori T, Slagsvold T, Brech A, Stenmark H (2004). Alfy, a novel FYVE-domain-containing protein associated with protein granules and autophagic membranes. J Cell Sci, 117(Pt 18): 4239–4251
https://doi.org/10.1242/jcs.01287
pmid: 15292400
|
91 |
Singh R, Kaushik S, Wang Y, Xiang Y, Novak I, Komatsu M, Tanaka K, Cuervo A M, Czaja M J (2009a). Autophagy regulates lipid metabolism. Nature, 458(7242): 1131–1135
https://doi.org/10.1038/nature07976
pmid: 19339967
|
92 |
Singh R, Xiang Y, Wang Y, Baikati K, Cuervo A M, Luu Y K, Tang Y, Pessin J E, Schwartz G J, Czaja M J (2009b). Autophagy regulates adipose mass and differentiation in mice. J Clin Invest, 119(11): 3329–3339
pmid: 19855132
|
93 |
Suzuki K, Kubota Y, Sekito T, Ohsumi Y (2007). Hierarchy of Atg proteins in pre-autophagosomal structure organization. Genes Cells, 12(2): 209–218
https://doi.org/10.1111/j.1365-2443.2007.01050.x
pmid: 17295840
|
94 |
Warr M R, Binnewies M, Flach J, Reynaud D, Garg T, Malhotra R, Debnath J, Passegué E (2013). FOXO3A directs a protective autophagy program in haematopoietic stem cells. Nature, 494(7437): 323–327
https://doi.org/10.1038/nature11895
pmid: 23389440
|
95 |
Wei Y, Pattingre S, Sinha S, Bassik M, Levine B (2008). JNK1-mediated phosphorylation of Bcl-2 regulates starvation-induced autophagy. Mol Cell, 30(6): 678–688
https://doi.org/10.1016/j.molcel.2008.06.001
pmid: 18570871
|
96 |
Wong E, Bejarano E, Rakshit M, Lee K, Hanson H H, Zaarur N, Phillips G R, Sherman M Y, Cuervo A M (2012). Molecular determinants of selective clearance of protein inclusions by autophagy. Nat Commun, 3: 1240
https://doi.org/10.1038/ncomms2244
pmid: 23212369
|
97 |
Yang L, Li P, Fu S, Calay E S, Hotamisligil G S (2010). Defective hepatic autophagy in obesity promotes ER stress and causes insulin resistance. Cell Metab, 11(6): 467–478
https://doi.org/10.1016/j.cmet.2010.04.005
pmid: 20519119
|
98 |
Zhang C, He Y, Okutsu M, Ong L C, Jin Y, Zheng L, Chow P, Yu S, Zhang M, Yan Z (2013). Autophagy is involved in adipogenic differentiation by repressesing proteasome-dependent PPARγ2 degradation. Am J Physiol Endocrinol Metab, 305(4): E530–E539
https://doi.org/10.1152/ajpendo.00640.2012
pmid: 23800883
|
99 |
Zhang Y, Goldman S, Baerga R, Zhao Y, Komatsu M, Jin S (2009). Adipose-specific deletion of autophagy-related gene 7 (atg7) in mice reveals a role in adipogenesis. Proc Natl Acad Sci USA, 106(47): 19860–19865
https://doi.org/10.1073/pnas.0906048106
pmid: 19910529
|
100 |
Zhao J, Brault J J, Schild A, Cao P, Sandri M, Schiaffino S, Lecker S H, Goldberg A L (2007). FoxO3 coordinately activates protein degradation by the autophagic/lysosomal and proteasomal pathways in atrophying muscle cells. Cell Metab, 6(6): 472–483
https://doi.org/10.1016/j.cmet.2007.11.004
pmid: 18054316
|
101 |
Zheng Y T, Shahnazari S, Brech A, Lamark T, Johansen T, Brumell J H (2009). The adaptor protein p62/SQSTM1 targets invading bacteria to the autophagy pathway. J Immunol, 183(9): 5909–5916
https://doi.org/10.4049/jimmunol.0900441
pmid: 19812211
|
102 |
Zhong Y, Wang Q J, Li X, Yan Y, Backer J M, Chait B T, Heintz N, Yue Z (2009). Distinct regulation of autophagic activity by Atg14L and Rubicon associated with Beclin 1-phosphatidylinositol-3-kinase complex. Nat Cell Biol, 11(4): 468–476
https://doi.org/10.1038/ncb1854
pmid: 19270693
|
103 |
Zhou G, Sebhat I K, Zhang B B (2009). AMPK activators—potential therapeutics for metabolic and other diseases. Acta Physiol (Oxf), 196(1): 175–190
https://doi.org/10.1111/j.1748-1716.2009.01967.x
pmid: 19245659
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